Gene detail

Detailed information of ENSCIQP00000022792.1 in Millepora alcicornis

Genomic Location: chr7:58348487...58418051
NR annotation: XP_047130892.1, putative ATP-dependent RNA helicase Pl10 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSCIQT00000026626

ATGAGTCATGTCGTACAAAATGATGTTCATAGCCTAGGGCAGCGTGTTGCTACTCTGGACTTGAACAAACAACATATTGAAGGAAGTCGATACATTCCACCACATTTGAGAGGGAAAGTTGGAGTAGCAAGCTTTGACAATCCACAACGAGGCGGTGGTGGCGGACAGTACTACCAGGGAGGTGGATACAACCAACGTGGTGGTTACAATAACTACCGAGGTGGTGGTGGTGGTTACCGACAGAACAATTATAATAACTACAATAACTACAACCAAGGAGGATACAATAACCAGTACAACCGTAATAGAGGTGGTGGACCAAATCAAGGTGCCTTCCATTGGAACTCAGAGAGAGGAGCGAGATGGGAAAATAATGATTTTCACGgtCCTGAGGATTGGTCGAAACCATTACCAAGAAATGAAAGGCTTGAAAATGAATTATTTACATCAGTTAAGTCTGGTATCAATTTTGACAAATATGAAGATATTCCTGTTGAAGCAACTGGCAATAGTGCCCCAAAGAATATAGAAACGTTTGAAGAAGCGAATCTTGGAGAAATCATAATCACTAATATACagCTTGCACGGTATAGCAAACCTACCCCAGTTCAAAAACATGCCATACCAATCATCAAGGGAAAAAGAGATTTGATGGCTTGTGCACAAACAGgatctggaaaaacagcAGCATTCTTGGTACCGATGCTCAGTCGAATATATGAAGAAGGTCCTTTTGAAAATGcgGGTAGTGTAAGACAAAGTGGTAGAAAGAAGCAATTCCCTATTGCACTTGTTCTAGCTCCCACTCGGGAGTTGGCCTCGCAAATTTATGATGAAGCAAGAAAGtttgtttatcGTTCTTGCATTCGCCCGTGTGTTGTTTATGGTGGGGCAGATGTGGGTACTCAAATGCGCGACATCGATCGAGGTTGTCACATGTTAGTAGCCACGCCAGGGCGGCTTGTTGACATGATACAGAGAGGAAAAATTGGTTTGGAGTGCATCAAGTTTTTATGTCTGGATGAAGCAGATAGGATGTTGGATATGGGTTTTGAACCACAAATTCGCGAGATTGTAGAAAAGTGTGATATGCCACCAACCGGTCAACGACAAACTCTCATGTTTAGCGCAACTTTCCCAAAGGAGATACAGATGCTGGCACGCGACTTTTTGGATAACTACATATTCTTGGCTGTTGGTCGTGTTGGGTCCACCAGTGAAAATATCACCCAGAAAGTGGTTTGGGTTGAAGAATGtgacaaaagagattttctattGGATTTACTCAATGCTTCAGgaCCGGACTCCTTAACATTGGTTTTTGTGGAAACAAAACGTGGAGCTGATGCTTTGGAGGACTTCTTATACAGGTGTCCAGAAAACTATAAAGCATCTTCCATCCATGGCGATAAACATCAACGTGAGAGAGAGAAGGCGTTACATGCTTTTAGAACAGGAGCAACACCAATACTGGTTGCCACAGCGGTGGCCGCTCGAGGTTTGGATATTCCAAATGTAAAGCACGTAATTAACTTTGATATGCCAAGTGATATTGAAGAGTATGTCCATCGAATAGGCCGTACTGGTCGTGTTGGCCATACCGGATTGGCCACATCATTTTTCAATGAGAAAAACCGAAATGTAGCAAGGGATCTGCTAGATTTGCTAGCCGAGGCGAAGCAAGAAGTTCCTCCTTGGCTCGAATCAATGGGATACCAGGCACAGCAACATCAGGCTGCAAGGAAAGCTCAGAAGAATAAATATGGAGGGGGTTTTGGAAGTCGAGATTACCGTCAAAATTTCAGTGGGCGAGGAGGCGGCCATCACAATCAGGGTGGTGGAAATTATTACAATCAAGGTGCAATGCATTATCCTGGAAATCCTTATTCCGGGTTTAACCATCAACCAATGTATAACCAACACTATGGTGGACATGGTGGTGGTGGCCGGGGAGGTAACCGTGGCAACAGTGGTCGAAGCAACAGTGATGATTGGTGGGAGAAATAA

Transcript

ENSCIQT00000026626

TGCAGAGTACAAGCCACAAGGTTGTAACAAGAAAACACAAAACAGATTGTAGGTTATAAAACTATACTTAAGATATTATAAAGTATTTCTTTGAGTTATGAGTCATGTCGTACAAAATGATGTTCATAGCCTAGGGCAGCGTGTTGCTACTCTGGACTTGAACAAACAACATATTGAAGGAAGTCGATACATTCCACCACATTTGAGAGGGAAAGTTGGAGTAGCAAGCTTTGACAATCCACAACGAGGCGGTGGTGGCGGACAGTACTACCAGGGAGGTGGATACAACCAACGTGGTGGTTACAATAACTACCGAGGTGGTGGTGGTGGTTACCGACAGAACAATTATAATAACTACAATAACTACAACCAAGGAGGATACAATAACCAGTACAACCGTAATAGAGGTGGTGGACCAAATCAAGGTGCCTTCCATTGGAACTCAGAGAGAGGAGCGAGATGGGAAAATAATGATTTTCACGgtCCTGAGGATTGGTCGAAACCATTACCAAGAAATGAAAGGCTTGAAAATGAATTATTTACATCAGTTAAGTCTGGTATCAATTTTGACAAATATGAAGATATTCCTGTTGAAGCAACTGGCAATAGTGCCCCAAAGAATATAGAAACGTTTGAAGAAGCGAATCTTGGAGAAATCATAATCACTAATATACagCTTGCACGGTATAGCAAACCTACCCCAGTTCAAAAACATGCCATACCAATCATCAAGGGAAAAAGAGATTTGATGGCTTGTGCACAAACAGgatctggaaaaacagcAGCATTCTTGGTACCGATGCTCAGTCGAATATATGAAGAAGGTCCTTTTGAAAATGcgGGTAGTGTAAGACAAAGTGGTAGAAAGAAGCAATTCCCTATTGCACTTGTTCTAGCTCCCACTCGGGAGTTGGCCTCGCAAATTTATGATGAAGCAAGAAAGtttgtttatcGTTCTTGCATTCGCCCGTGTGTTGTTTATGGTGGGGCAGATGTGGGTACTCAAATGCGCGACATCGATCGAGGTTGTCACATGTTAGTAGCCACGCCAGGGCGGCTTGTTGACATGATACAGAGAGGAAAAATTGGTTTGGAGTGCATCAAGTTTTTATGTCTGGATGAAGCAGATAGGATGTTGGATATGGGTTTTGAACCACAAATTCGCGAGATTGTAGAAAAGTGTGATATGCCACCAACCGGTCAACGACAAACTCTCATGTTTAGCGCAACTTTCCCAAAGGAGATACAGATGCTGGCACGCGACTTTTTGGATAACTACATATTCTTGGCTGTTGGTCGTGTTGGGTCCACCAGTGAAAATATCACCCAGAAAGTGGTTTGGGTTGAAGAATGtgacaaaagagattttctattGGATTTACTCAATGCTTCAGgaCCGGACTCCTTAACATTGGTTTTTGTGGAAACAAAACGTGGAGCTGATGCTTTGGAGGACTTCTTATACAGGTGTCCAGAAAACTATAAAGCATCTTCCATCCATGGCGATAAACATCAACGTGAGAGAGAGAAGGCGTTACATGCTTTTAGAACAGGAGCAACACCAATACTGGTTGCCACAGCGGTGGCCGCTCGAGGTTTGGATATTCCAAATGTAAAGCACGTAATTAACTTTGATATGCCAAGTGATATTGAAGAGTATGTCCATCGAATAGGCCGTACTGGTCGTGTTGGCCATACCGGATTGGCCACATCATTTTTCAATGAGAAAAACCGAAATGTAGCAAGGGATCTGCTAGATTTGCTAGCCGAGGCGAAGCAAGAAGTTCCTCCTTGGCTCGAATCAATGGGATACCAGGCACAGCAACATCAGGCTGCAAGGAAAGCTCAGAAGAATAAATATGGAGGGGGTTTTGGAAGTCGAGATTACCGTCAAAATTTCAGTGGGCGAGGAGGCGGCCATCACAATCAGGGTGGTGGAAATTATTACAATCAAGGTGCAATGCATTATCCTGGAAATCCTTATTCCGGGTTTAACCATCAACCAATGTATAACCAACACTATGGTGGACATGGTGGTGGTGGCCGGGGAGGTAACCGTGGCAACAGTGGTCGAAGCAACAGTGATGATTGGTGGGAGAAATAATTACACCTAAGTGGACTGCCGCCATCAACATAATTGATTAGTTCTTGCATCATTAGTTTCATCGATGGCAAGATACTAGAATTTGTTCTGTAGCCATTATGTTATTGTTTTCACGAGGAGCTTTTCATTGGTTAGCATTTCCTTAGCAAAATTCTTGCCAGTTGGTGCATGTTATGGATCTGATGAACACGGAAGAAAGAAACCACGTTAAGGACTGTAATATGACGTCTCAGCTAAGAAAACGACTAACTTTACTTTGCTGCACAATTCGGAAAACTGAGCTAAAATTTCATGCATCATCCACTTGTAGCAACCTTGTGGCTGGTGCGACTTGTTCATATTTTACCCAGTAAGCAAAATCTGCTCAAAATCAACAGTAGGCAGAAGGCCAGCAtccaaaatttgttcaaaattagcaatac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GVM6	ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes OX=9598 GN=DDX3Y PE=2 SV=1
O15523	ATP-dependent RNA helicase DDX3Y OS=Homo sapiens OX=9606 GN=DDX3Y PE=1 SV=2
P24346	Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000960 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11594	DDX3X, bel; ATP-dependent RNA helicase DDX3X	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.