Gene detail

Detailed information of ENSCIQP00000023014.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047141905.1, chromodomain-helicase-DNA-binding protein 1-like isoform X1 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000026908

CAAAGCTTTGCTTTTCTCACAAATGACGACCATGCTGGACATTGTGCAAGACTACTTAACGTATAGAGgTTTTACATACGAGCGTCTTGATGGGTCTGTTCGTGGGGAAGAAAGATTTCTTGCTGTTAATAACTTCAATGCATCTGATGATACCTTCATATTCCTACTTAGCACAAGAGCAGGAGGACAGGGTCTCAACTTGATGTCTGCAGATACTGTTATCTTTCTCGACAGTGATTTTAATCCACAAAATGATTTGCAAGCTGCAGCTAGAGCACACAGGATTGGTCAAAAAAGACCCGTGAAAGTTGTAAGGTTGATTTCACGAGATACTGTTGAAGAAATTGTACTGAAAAGAGCGGAAGGAAAGTTAAAGTTGACTAACACTGTTATTGAAGGTGGACAGTTCTCAAACGTGAAATTGGACATACACAATAGAGAGcttaatgatattttgaaatttggcttGGAAAAACTACTGGCTGGTAGTAACAGtGCACTAGATGATATCGACGTTGAAAGTATTTTAGGGAAATCAACAAATGGTTTGTGGGATACTGAAGCAGAGCAAACAAAGGTTGCCACAGCCAAAGAAGAAGATAGTGATACCAAAATAGATAACATGTACCAATATGAAGGGAAAGACTACTCTAGAACTTCAGAAGCTGACCAGAAAGTGTTTGACCAACTTATCAGAggTGTTGAAGAGGCATTCCAAGGAGAAAGATCATTGCGAAAAGATAAAGCAgtTAAACAGACTTTGTTTCTACCAGATCCTCAACCACGTAAGAGAAAGGTTCTGACGGACAAAGAGAAAGAAATTATCCGGAAAAAGcAAGAAGAAAACAGGGCGAAACGTACGAAACTGGAAGATgaaagaaagcaagaaaaactATTTAAATTGTGGTCCTCTCATAACTACTTTTCTATGAAAATCGAAATCCCCGATGAAAGTAGCGATACAGAAAACATTTCTTCTTCACCTGATATTGACGACATTGCTGTTGATGAAAATGAGATAGATAATATAGAATACGTGGTTGGAGATGTGACACAACCCAAGAACATTGGTGGAAAAGAGAGTATCGTGGTACATTGTGTAGACGACTCGGGGCACTGGGGGAGTGGAGGATTATTTAGCGCGATTGATAAGCATACTGACGCCGTTAAAGATCAATACGAAATGGCTAGCAAAATGAAAGaTATAGAGATTGGTGATGTTCACATGGTTCAAATATCAAAGGAAGATGTTACTCCTAAAGTTTACGTTGCTCTACTTGTTGTTCACACTAGAAACAAAAAGAACCAACTCTCTTCAATGTTATTTGATGAATTAAGGCATGGTTTGGAAACAATTTATCATGTTGCCAGGGAAGTAGGAGcaAGTGTGCACCTTCCAAGAATCGGTTACAATACCAAGAATTTTAACTGGTATGGAGCAGAAAAgctgatcaagaaaatttttgctcAACGAAAAATTCCAACTTTCATATATTACTTTAAACGAGGATCACGTCAGCAAATTCCAACTGGGCCACCACCAAAAGAGGAAGTTCTGGAAAATCCTGTTTCAGAACCTACCATAGCTTACGTTGCAGAAGAAGCCCAATCTAGCAAAtcacaaacttttgaaaatgccAGTCAAGGGAAAGCTACTAACGCTCCAGACATTCTGTTGGATATCTTTTCAAACTGTTGTATCTATTTTCACGACTTCAATAACAATGATGAGCTGAAACGAATGACAAGATATGTTATAGCGTATGATGGTGACGTTGCGGCGTATTTATCAAGTGACGTCACACATATTATTTGCAAGGACAAAAGTGGTAAAGATACGCTAGAGGATGTAGAGAGCAATGCGAAAATAGTTTCAGTGAAGTGGATTGATGATTGTATAAAGGAACGAATGATTTGCACTGAAAAAGAGTATTTAATGGAGTAGTTtgtcatcatttatttatttataatactttttgatttgaaattctgAATGTAGAAGCAATCAGCCGGGGTTGTTGTGAAAATGTGCTGCTCTtgaaatacaaacaaacaaacctcTAAGAATACCTAGGCTTAAACTTCGATAGAATGACCAAAAACTTAAAACTCTACTAAGTTAGTGCTCCCTCACGGTAAGGCGCAAggtttttgtctatattttaagAGTAGGTACTTTTCGAAACACTTCCAGACATGTCCTCCCTCATAGTAAGACGAATTCAGATTTGTAACCATTTCGTAGATATGCAGTATACACTAAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZU90	Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio OX=7955 GN=chd1l PE=2 SV=1
Q86WJ1	Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens OX=9606 GN=CHD1L PE=1 SV=3
Q9CXF7	Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus OX=10090 GN=Chd1l PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000968 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF16759 all species →	LIG3_BRCT	DNA ligase 3 BRCT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR031053 all species →	Family	Chromodomain-helicase-DNA-binding protein 1-like	Interproscan
IPR031916 all species →	Domain	DNA ligase 3, BRCT domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47157 all species →	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000023014.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.