Gene detail

Detailed information of ENSCIQP00000023047.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047130495.1, amyloid-beta-like protein [Hydra vulgaris]
Species abbreviation MALCI · all data for this species · gene families

Sequence

CDS

ENSCIQT00000026947

ATGTataaacagatttttttcttaCTTGTATTAGTTTGTGGGGTGTATTCCTCGCTACTTGATATTTTTGGACTAACAAATGGTCGTGAACCAAGAGTTGCACTCCATTGTGGCAAGGTGCCTTTTTATGTTGATTTGGAGACAGGGAATTGGGTTGCTGATAGTGAGGGCAAACAAAAATGTGATGGGGATAAAGAAGAAGTGAAAAGctTTTGTCAAAAGATTTATCCAAAGCTCAACATAACAAACATTGTTGAAGCAAATGATCCCGTTGAATTTAAGAACTGGTGCTCGCCAGGGTCTTCCCAGTGTGACTACGAACGAAAAGTTGTGCCATACAGATGTCTTGtaaacgAATATGAGGCTGATGCATTGATGGTTCCAGATTCATGCAAATTTGATCATATCCATGATCAAGACCTTTGCATGAGCCATGATCAATGGCGCGAACGAGCTGAAGagacatgttcttcaaaatatggcATGAAAGTAAAAGATTATGGAATCTTACTTTCCTGCAAGACAGATCTATTCACAGGTGTCGAATTTGTGTGCTGTCCAGAACGAGTGATCAAGGAAGCTAAAGTTGCAGAAGAACACGCTCGCAAAGTCGCAGAAGAGGAGAAGAAGAAGCaagaagagaaaaagaaggaagaagaAGCACATAAACACACCAAAGAAATTTTAATTCCAAGCAAAGCTGAAATTGATCATGATTTATTTGCTGAAGCTATCCGTAACTTCCAAACGTACCTTCCCATGGAGACCAAAGGATGTGACCGAAGCGCATACCTCACCAAAAGAACAAAGATGGAAGACCGTCATCGTGATCAGATTGCTGCTGTTGTTGACGAGTGGGACGAGGCagagaaaaaatataatcaattgaaATTGAAAGACCCAGTTTCTGCTGAAGAAAAGATGAAACGCACATTGGAAGTATTCCGCCAGACTCTTGCCGCATTAGAACAAGAATCAAAGGAAGAGAAGAGCCGATTACGTGCAGAACATGCTGAATGCATCAACACGCAAATCAACAAGGACAAACGTGATGCAATGATCAAATACTTGCAAACAATCGAGGAAACACCAGTGAACGCTGAACACATATTGCAAGCCGTGCGCAACTTTATTCAAGTCTGTGAACACGACCGTGTACACAGCCTTCGCCACTTTGAGCATGTTCGAAACCGCGATCCAAAAGAAGCTGACGAAATGCGCGGACAGCTCTTACAACATTTGAAGAACTTGAACAAGGTTGTTAACGAAAGTATGGCTTTGTTAAATTACTTACCAGAAATTGCCGAACAATTTGGACTTACTGGATCAGTCGGAGGTGCTATCTTAAAACCAAGACTTGAAATGCCAGAGGAAGAACCACATGACCACGAACGTGTACATGAAATTTTAAAGGAAGGAGCTAAAAAATATGGTTCAATTGAAGCTAGCCCTAATACCGATAAAGTCATCAAACCAACAGATGATATTCCAGTTGAACCAAAACCAGTTAGTGAAGTCGTTACGCCTAAATTAGATGAGCATAAATCATACGAAGAGAAATTGCATGAGGCATGGGAGAAAGaacttaaagaagaaaaagaggagCATGAAGAAATGGACGAGGAggaaagagaaaagaaagaaatgatttttgaGAAGGAGAGTGAATTGATCGATAACGCAGAGAAGCATGATGAAGAATTGACcaaagaagaaagagaagaaaaagaaaatatttttgagatggAGAAGAAGTTACTCCAAAAAGTTTTAGAACGACAGGATATGGAAGAAGAAGAGGATGAAGAAGAAAGGATAGTCCGAGAACATCAAAAAGTATcacagaaaaaaggaaacaaaacacCTGTTGCTATTACAGCCATCTTAGGATTAAGTATTGGTATTCTTGTCATCATGTTGTTTGTCGTTATCGCCATGGTAGTCAGGCGACGTCGACTGAATGTTACACGAGTTGTATTAAGTGAAAATGGTGATGATCGCGAACACCTTGTTCAAATGCAAAAAAGTGGTTTTGAGAACCCCACTTACAAATTCTTTTACTATTGA

Transcript

ENSCIQT00000026947

AGAGGCAAAAAAAGTATTGGTGTTACTCAGTAGATTGATGATTTATACttcttttagagaaaaaaagataaattctaaataaagttcgaatcaaaacaagttattttttattgacgAAGAAATTGAAAGATTAACAATGTataaacagatttttttcttaCTTGTATTAGTTTGTGGGGTGTATTCCTCGCTACTTGATATTTTTGGACTAACAAATGGTCGTGAACCAAGAGTTGCACTCCATTGTGGCAAGGTGCCTTTTTATGTTGATTTGGAGACAGGGAATTGGGTTGCTGATAGTGAGGGCAAACAAAAATGTGATGGGGATAAAGAAGAAGTGAAAAGctTTTGTCAAAAGATTTATCCAAAGCTCAACATAACAAACATTGTTGAAGCAAATGATCCCGTTGAATTTAAGAACTGGTGCTCGCCAGGGTCTTCCCAGTGTGACTACGAACGAAAAGTTGTGCCATACAGATGTCTTGtaaacgAATATGAGGCTGATGCATTGATGGTTCCAGATTCATGCAAATTTGATCATATCCATGATCAAGACCTTTGCATGAGCCATGATCAATGGCGCGAACGAGCTGAAGagacatgttcttcaaaatatggcATGAAAGTAAAAGATTATGGAATCTTACTTTCCTGCAAGACAGATCTATTCACAGGTGTCGAATTTGTGTGCTGTCCAGAACGAGTGATCAAGGAAGCTAAAGTTGCAGAAGAACACGCTCGCAAAGTCGCAGAAGAGGAGAAGAAGAAGCaagaagagaaaaagaaggaagaagaAGCACATAAACACACCAAAGAAATTTTAATTCCAAGCAAAGCTGAAATTGATCATGATTTATTTGCTGAAGCTATCCGTAACTTCCAAACGTACCTTCCCATGGAGACCAAAGGATGTGACCGAAGCGCATACCTCACCAAAAGAACAAAGATGGAAGACCGTCATCGTGATCAGATTGCTGCTGTTGTTGACGAGTGGGACGAGGCagagaaaaaatataatcaattgaaATTGAAAGACCCAGTTTCTGCTGAAGAAAAGATGAAACGCACATTGGAAGTATTCCGCCAGACTCTTGCCGCATTAGAACAAGAATCAAAGGAAGAGAAGAGCCGATTACGTGCAGAACATGCTGAATGCATCAACACGCAAATCAACAAGGACAAACGTGATGCAATGATCAAATACTTGCAAACAATCGAGGAAACACCAGTGAACGCTGAACACATATTGCAAGCCGTGCGCAACTTTATTCAAGTCTGTGAACACGACCGTGTACACAGCCTTCGCCACTTTGAGCATGTTCGAAACCGCGATCCAAAAGAAGCTGACGAAATGCGCGGACAGCTCTTACAACATTTGAAGAACTTGAACAAGGTTGTTAACGAAAGTATGGCTTTGTTAAATTACTTACCAGAAATTGCCGAACAATTTGGACTTACTGGATCAGTCGGAGGTGCTATCTTAAAACCAAGACTTGAAATGCCAGAGGAAGAACCACATGACCACGAACGTGTACATGAAATTTTAAAGGAAGGAGCTAAAAAATATGGTTCAATTGAAGCTAGCCCTAATACCGATAAAGTCATCAAACCAACAGATGATATTCCAGTTGAACCAAAACCAGTTAGTGAAGTCGTTACGCCTAAATTAGATGAGCATAAATCATACGAAGAGAAATTGCATGAGGCATGGGAGAAAGaacttaaagaagaaaaagaggagCATGAAGAAATGGACGAGGAggaaagagaaaagaaagaaatgatttttgaGAAGGAGAGTGAATTGATCGATAACGCAGAGAAGCATGATGAAGAATTGACcaaagaagaaagagaagaaaaagaaaatatttttgagatggAGAAGAAGTTACTCCAAAAAGTTTTAGAACGACAGGATATGGAAGAAGAAGAGGATGAAGAAGAAAGGATAGTCCGAGAACATCAAAAAGTATcacagaaaaaaggaaacaaaacacCTGTTGCTATTACAGCCATCTTAGGATTAAGTATTGGTATTCTTGTCATCATGTTGTTTGTCGTTATCGCCATGGTAGTCAGGCGACGTCGACTGAATGTTACACGAGTTGTATTAAGTGAAAATGGTGATGATCGCGAACACCTTGTTCAAATGCAAAAAAGTGGTTTTGAGAACCCCACTTACAAATTCTTTTACTATTGAAAACGGTGTCGTAAGCATGATGTAGGTCGTTACATAACTATGTAAAGATTAACAAGAATCTGAGTGAAAACTTGTAGAGGAAAGACAATTTGAAACGGACCCAAAGACTAAGTTTTGTAACAAAAAGCATGTATTGTGTCATAAATTCGAGCTTTCTCCCGTTTCTTCACAATAGAGAACACGAACATGAACACAAGAGCTATTTCACTGTCATGTCTACTTCTCGggattctttttatcaaatatgaaaaatgaaagagGTTCTATTTTTGCTAAATAGTATTGAGTATGTTGGTTTCAGTTTTGTCAAAAAGGAACttgagctttttaaaatttatcagtgtTAGTTAACTCTTTaacacatttgttcccaatgcaccctttctctaccccccgaaaacatcgggttcatgcctggtgtccactaataAGGTTAAAATACCTCGAATTATAATTTTCACCTgttcttggtatattttttgtgaagtgtgATAAAAAGTGCAAGAGATGAGCTTTggaaattttcattaacaataaatgAAAGTACTGTTCTTATATGCTTTTATTGTGTATGATGAGCACTACCATTATGGTCATtatatctttttacttttttatattcgatgtaaaattttttttttttttgagttataaGAATCATAATAACAAAGTAAACTTAATAATCTTTAGAAGAGTTGTAACGatttcaaaatgactttattaACGAAATCTCGTGACaaccggtaattacatgttcaaagttaacaatagaaacactagagcaaggtgtgaaatatgttaaaagttaacaataacaatagccATTGGCGTCgtattgttaattttggacatatttcacaccttgttctagtgtttctattgttaactttgagcaggtaaatgccgactgggatgaCAGCTGATTTATTCATATGAAGTTTTGAAGTTTCGATTTGCGTGAAATCttcgaaaatgttttaatatatcaaatttaatagC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06335	Amyloid beta precursor like protein 2 OS=Mus musculus OX=10090 GN=Aplp2 PE=1 SV=4
Q10651	Amyloid-beta-like protein OS=Caenorhabditis elegans OX=6239 GN=apl-1 PE=1 SV=2
P15943	Amyloid beta precursor like protein 2 OS=Rattus norvegicus OX=10116 GN=Aplp2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006067 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12924 all species →	APP_Cu_bd	Copper-binding of amyloid precursor, CuBD	Domain	Interproscan
PF12925 all species →	APP_E2	E2 domain of amyloid precursor protein	Domain	Interproscan
PF02177 all species →	APP_N	Amyloid A4 N-terminal heparin-binding	Domain	Interproscan
PF10515 all species →	APP_amyloid	Beta-amyloid precursor protein C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008155 all species →	Family	Amyloidogenic glycoprotein	Interproscan
IPR036669 all species →	Homologous_superfamily	Amyloidogenic glycoprotein, copper-binding domain superfamily	Interproscan
IPR008154 all species →	Domain	Amyloidogenic glycoprotein, extracellular	Interproscan
IPR011178 all species →	Domain	Amyloidogenic glycoprotein, copper-binding	Interproscan
IPR036454 all species →	Homologous_superfamily	Amyloidogenic glycoprotein, heparin-binding domain superfamily	Interproscan
IPR036176 all species →	Homologous_superfamily	E2 domain superfamily	Interproscan
IPR019744 all species →	Conserved_site	Amyloidogenic glycoprotein, copper-binding domain conserved site	Interproscan
IPR024329 all species →	Domain	Amyloidogenic glycoprotein, E2 domain	Interproscan
IPR015849 all species →	Domain	Amyloidogenic glycoprotein, heparin-binding	Interproscan
IPR019543 all species →	Domain	Beta-amyloid precursor protein C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23103 all species →	ALZHEIMER'S DISEASE BETA-AMYLOID RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007409 all species →	Biological Process	axonogenesis	Interproscan
GO:0007417 all species →	Biological Process	central nervous system development	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046914 all species →	Molecular Function	transition metal ion binding	Interproscan
GO:0008201 all species →	Molecular Function	heparin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000023047.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.