Gene detail

Detailed information of ENSCIQP00000023049.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_002160512.2, protein LSM14 homolog [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000026950

CTTTTCTAGGTTTTCTAACGGCCGGCGAGGAGGTAACGTAGAGGCGTAGAAGACTAAGTTCTTCTCACAATCTATCAAAATCCTTTGAATAATTGTATTGTAATAGACGCTTTTTATTAAGAAGCCAAAAATGAGTTCTGGTACCCCCTATATTGGGAGTAAGATTAGCTTAATTTCCAAAATGGAAATACGCTATGAAGGATTTCTGTACACTATCGACCAAACAGATTCAACAGTCACTTTAGCTAAAGtcATATCACTTGGCACGGAAGACAGAGCACCGAATAACCCAGTTCCGCCAAGGGATGAAGTGTTTGAATATATTGTATTTCGTGGAAGTGATATTAAAGATCTGCATGTATGTGAAGCTCCAAAAACAGTTGAAGACCCAGCCATTTTGCATAATGGTCCTGTGCAACGAGCAAATCAGTCTCAGTATAATCATCACCACACCCACAGCAATACGTCTGCCGTTACACAACCATACACACCATTCTCAGGCAACATGGCACCGTTTTATCCTAATATTCTACCACAGGGAGGGTCGCAAGATATTAGTCAACGTCAGAGAACACCACCCACATTACCAAGAACACCCACTCCAGAGCCGCCAAAGTCACATCCGAAAGAGGAAAGAACTCATTCAATACATCAAAGTCGGACAAGACATGATAGTAACAAAGACAATCGCCAACGGAAAGATGGATACGATAAGAAAAAGGAAGACCCAAGGGACAATAGACAAAAAATCGATAAggagaaaaaagataaagaaaatagatccCAATATCGCCGCGATAATCGTGATTACAATCGTGATTATAATCGTGATTACAATCGTGATTACAATCGCGATAACCGTCAGAATCGCGAACGATATGACTCCAGTCGCCGTGGCAGTCAACGTGATGAAAAGGAAGCCAAACGAGACGATAGACAGGAAGATAGGTATAAGaaggatgaaaaagaagaaaaacgttCAGGGTTCaaagaaagtaataatagaaGAGgtgGTCCTCGGTCACGCGGAGCATCACGTGGTAATCGTGGTAGCAGAAATGGAAATAACCGTGCTAAGTATGCAGAAGACTTTGATTTTGAAGAAGCTAACTCAAAATTTcacaaagaagaaattgaaaaagaactattaaaagtTCTGAAGAAAGTTAAAATAGATGATGAGgaagCAGGGACcaaagaattaattgaagaaaaagaagaaaatgagcTGGATCCACTCCCTTCTCCAGAAAAGTTTTACGATAGATCCAAATCTTTCTTTGATAATATCTCATGCGAGGCTATGGGGCCCAAACAAGACGAGCAGGAaattatGTCGAGGAGACAAGAACGCGCCCTGAATTACGAAACTTTTGGTAGTGCAGCAAATTATAGAACTGGAAATTACCGTGGAAGAGGTCGAGGAAGAGGTCGTGGGCGAGGACGTGGAAGAGGTGGATATAGAGGTCGAGGTTCAAACCGTGGTTATAGTCATAATAGAAATTGGGTAGACTATGAATTCGATTTTGTGGCAGCTGGTATAACAAACCAGAATAGACAAACCTCGGCGTCAGTTGgtGGAAGTTAATTGAAGACTTGGTATTAGTTgaatatgtaaatagaattgtagttttaaaagaattcaagTTCTCACGAGCATTCCACGTAGTATTTATCAGTGAATTTCGGATAGACTATAAACGTGTGGAAATCGATCGTGAAGATTTGcagaaatttcacagaattccTTGTTGAGTTGAATGAATGAACTTTTTGTTAGACTTTAGTGGCAAAAGTAAACTTCTTCATATGTGCTATTATTGAAACCTTATCAGATCAGTAATTAAGTTTAAGCAGCAAGTTTCTGGGGaatcaagtttctgggaagttaagccatttctggccaatgttcccattttataccccctgaaaacaccagaaaaacaaaagttttctggtgtttttaggaaGTGCAAAATGGGAATATTgcccagaaatgggttaaattagcaacaaaaacataaaagcatttttagttatcttatcTCAAACGTAAGGTTTCAGTACTACATATGAATGAAGTTCTTTTTGCTCAAACTAGAACATATCTAATAATACCGTCACATTCCCTCAGTAAAACATATACGTTGCTTTTCCAGTATTTTCTACAGAAATACCCACCTCacaattcatttaaaaagaattccAATCAAGAAGGAATGTTATGGTaattcaatgaattattaaaaaatatgtgagATTATTTTATTcgtattttttgataattgtatttataaatagtgtttattattttacttgctTCCATGGTAGCAATAGGCAAATTTATCTTGCCATTTTGGGAGCCTTTTCAGTCCCCcagacttgaaaattttgcttatgtGTCCATTTTTCAATGTATGTCCATTTTCCATCTACTACCTGTTTCTGAATGTCAAGTATAACTCTGCATATCTGGTACAATGAAATAAtctacatgtttttttaaaaaaatcggaaATTGCGAACTTGTGTTGATTTTAGTTTTGTTATGTTTCCCaacttttcaacagattttgt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K2F8	Protein LSM14 homolog A OS=Mus musculus OX=10090 GN=Lsm14a PE=1 SV=1
Q3MHF8	Protein LSM14 homolog A OS=Bos taurus OX=9913 GN=LSM14A PE=2 SV=1
Q8ND56	Protein LSM14 homolog A OS=Homo sapiens OX=9606 GN=LSM14A PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12701 all species →	LSM14	Scd6-like Sm domain	Domain	Interproscan
PF09532 all species →	FDF	FDF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047575 all species →	Domain	Sm domain	Interproscan
IPR019050 all species →	Domain	FDF domain	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR025609 all species →	Domain	Lsm14-like, N-terminal	Interproscan
IPR025762 all species →	Domain	DFDF domain	Interproscan
IPR025761 all species →	Domain	FFD box	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13586 all species →	SCD6 PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan
GO:0034063 all species →	Biological Process	stress granule assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18749	LSM14, RAP55, SCD6; protein LSM14	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.