Gene detail

Detailed information of ENSCIQP00000023261.1 in Millepora alcicornis

Genomic Location: :...
NR annotation: XP_047142297.1, squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSCIQT00000027206

GATAGCAAACTGAAAATCCATTCTATAGCATTGTCCGTCCATGAGAGAGCAGTAAGGAACTGCCCCTGGATTAGTAAACTTTGGCAGAACTACCTGAAATCTATGGCTGCTATAACGGACTGAGAAAATTACATGAAGGAGAAATGATTTTCCTTTGGGAATTGGCACCATTCAGCGACAAGTTATGATTTTGTTCTCGGACAAGGAAAGGAATAATAAGGAATATGAAAAAGTGAGGGATGTGTTTGAGCAGTCACTTAAAGGAGGTTTTGCTGATTCAAAAAGTTATCTTGATATTTGGTTGTTGAACATGGACTATCACAGAAGGAGGGTGACAAATTGGCATGCAGAAGATGAAAAAGTAATTGAGCTTCACAAAGTGTTTGAAGATGCTGTTACATATATGAATCGCAGTTTTGGACTGGAAGGTGATAAATATTGCGTGTTACTGCGTGAAATGGCACTGATTGAGGCAAAGTATCTCCACAATGTAAATAGGGCGCAAGAATTGTGGGATACTGTCATGAAAAAGCACTCACGCGATACGAATATGTGGCTAGAGTACATAAGCTTTCTAatGTTGTATTCTGATGAGACCGCAATACGTCGTGTGTTTCAGCGAGCTGTACAGATAAGTTTTGAACAGCCTGAAATTATTTGTGATGCATTTATCAAATATGAAAGACAGTATGGAAGCTTGCAAACTTTAGATGATGCTCAGATTAAAGTCGATGTGCagatacaaaaaacaaaagatagaAGAGTAAAAGAATTGGATAGGCAAAATCAGAATGAAACATCTGAAAAACGACatgaaaagaaaggaaaagataaatataaatttttaccgGATGATaaaaagagaaagaagcaaaagcaTGAAAAGCAAAACCACCGGCGTGACATTAAGAGGGCAGCCGATTTAGACGGTTTTAAAGAACCGTTGCCAAGTAAAAAAGCAAGAGTGAATAACCAAGCCCAAGAAAACCTTTCCGAATCAGACGATCGTCCAGGATCAGGAGGAGTTGTGGAGATTCCTGTGGAAATAGTAAGTTCGAGTACAATGGAAGAtaagttacagaaaaaaactaatcttGAAATACCGACGAAAACAAATGGCGAATCAACCAACAAAACGCCAAGTATTACAGCAGAACCTGTGCCAATGTCTGTCGCATCAACATTACGTGACATTGAAATGGAAGTTACAGAAAATTCAGATGAAGGAAAAGGAAAGATAGAAGATGAACCAGCAAAACCAGATACAGTCGATAACGAACGCAGTGTATTTCTCAGCAATATGTTGTTCACGGTAGAAGAATCCCATATTCGAGATTTATTCCAAAAGTGTGGAGAAATCAGTACAGTTCGTATTGTATTAAATCGAGCAGGGAAATCCAAAGGGTTTGCATATCTAGAATTCAAAGATAAGGTCTCCGTAGAGAAGGCTTTAGCGTTGGACCGTGAAAGTTTACTAGGAAGACCAGTATTTGTGTCGCGCTGCGTGGACAAGAAAGAAAATCCAACGAAATTTAAGTTCCCAACGACACTAGATAAAAGGACATTATATGTGACCAATATTCCGTTTGAAATAACCACAGAAGAATTAACCAAAGTTTTCGTAGAGTgtggaaaattaaaacaagttcGAATAGTCACAAACCGGTCAGGAAAATCTAAAGGATTTGCATATGTTGAATATGAAAACGAGTCAGATGCAGCTAGTGCTGTTGTTAAAGTAGACAAACGTGTAATTAACAATCGACCTATCAATGTAGCGTTGTCCAACCCTCCAGCACGTAAAGTAAAAGTTGCAGATGGTTCAGCAGATGCTGCAAAGTCTCGTCCTCAAGAGCAACCAGGAAGTCGTGCAAGATCAAAAACGCAAATATCTTTATTACCACGTACGCTTCAAAAATCAACATTACAGTCAACAGCAAAACCATCGGAACCCGTTTCGGTTAATAATCAACCCAGCTCTGCAAGCGAAAAATCCGATATAGCTGCTAGTAACGCTCAGGAGAAATCGACCATGAGTAATTCTGATTTTCGGAAGTTtctgttaaaatgaaaatatattctatgataatagatttttttgtCTTGTGATTC

Protein

Uniprot

Uniprot term	Description
B3DJT0	Spliceosome associated factor 3, U4/U6 recycling protein OS=Danio rerio OX=7955 GN=sart3 PE=2 SV=1
Q5REG1	Spliceosome associated factor 3, U4/U6 recycling protein OS=Pongo abelii OX=9601 GN=SART3 PE=2 SV=2
Q15020	Spliceosome associated factor 3, U4/U6 recycling protein OS=Homo sapiens OX=9606 GN=SART3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF05843	Suf	Suppressor of forked protein (Suf)	Repeat	Interproscan
PF16605	LSM_int_assoc	LSM-interacting associated unstructured	Disordered	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR008847	Domain	Suppressor of forked	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR034217	Domain	SART3, RNA recognition motif 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000463	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan