Gene detail

Detailed information of ENSCIQP00000023442.1 in Millepora alcicornis

Genomic Location: not available for this species
NR annotation: XP_047142582.1, protein pelota [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Sequence

CDS

Transcript

ENSCIQT00000027440

AGGAGCAGTTCCTCTTAACTTAACTCGACCAAGGATAGCTAGGCTGTAAACCTAGATCAAGCTAAGTGTACTGAAGAATACTGACACCGAAAATGgaaatagaatttattaatatttgtttaatgacTGCACCAGATCCTAAAAGATGAAGCTGCTATATAAATCTTTTGAGAAGAATGGTTCTGGCCATGTTGGACTTATTCCAGAAGAACCTGAAGACATGTGGCATGCATATAATTTGGTGGCTCCCAATGATAAGTTGCGATCAACAACGATTAGACGTGTGCAAACAGAATCAGCTACTGGCAGTACTAGTAGCAATAAGGTTCGAACAACATTAACAATACAAGTTGAAACAACAGATTTTGATATTCAAGCATGTGTGTTGCGAGTAAAGGGAAGAAATGTTGAGGAAAATCAGTATGTTAAGatGGGCCAGTACCACACAATTGATCTCGAATTGAATAGAAAATTTGTTATAACAAAGGATGAGTGGGATGTTGTTGCTATTGAGCGAATTGAAAATGCATGTGATGCAACCAAGCAAGCTGACCTAGGAGCCATTGTCATGCAAGAAGGAATGGCACACGTATGTCTTGTTACTTCCAGCATGACAATAGTCCGAGCCAAGATAGAAGTAAACATTCCAAGAAAAAGAAGAGGGAACTGCTCTCAGCATGATAAGgGTTTGCTGAAATTCTATGATCAAATAATTCAAGCAATTCAAAGGCATTTTAACTTTGAtaTTGTGAAGTGTGTCCTCGTTGCAAGCCCTGgttttgtcaaggaccaGTTTCTGGAATATATGTTCAGCCAGGCCATTAAGCTGGAACTCAAGGTTCTCACTGAAAATAAGTCGAAGTTTTTAGCGGTTCATTCTTCGTCTGGGTTCAAGCACTCACTGAAAGAGGTTTTAGCAGACCCTGCTGTTGCATCCAGACTTTCTGATACAAAGGCAACGAGTGAAGTGAGAGCATTGGAATCCTTTTACACAATGTTGAAGAATGAACCAGATAGAGCGTTTTATGGTATTGGTCATGTGGAACGAGCTAATGAAATGGCAGCCATAGAAACTTTAATGGTGACGGACGCGTTATTTCGATCGAGTGATTTGGCAACTAGGAAACGTTATGTAAATCTTGTGGAGAATGCCAGGGACAATAACGCTGACGTTAAGATCTTCTCAAGTCTTCATGTCTCTGGAGAACAGCTCGGTCAGTTATCTGGAGTTGCCGCCATTTTGCGGTTTCCATTACCCGATTTAGCTGACGAATTATTTAGTGACTCAGAAAGTGACGACGACGGTGAATGATCCCACTTTTACTTTGCTGTCATTCATATTTTCAtaggtttttttaataatttcaaaataatagtttatttataaataaaagcaattgttaTTAGGATATATTAACAACATAAAGTTGTTATAAGTATCGAACTAAAACGTATGTTCAGTTGGcatgttttgaaaatgtaattttagtaACCTTTCCAATGTTAGACTTTTTCAGGACGCATGGCTCTGATAGAAACATATTTCCTAACTTACTTTACGCCCAACATATTCTGGAACCATCCCAAAAGTAACAAGCAGAGGTCATCTACATAGTTATTTGTTTTCCGGCTGACACAGCCTGTCTCACGCCAATGATTTGtctctatacctcctgaaaacctagaggttttccgatgtttcagggggtgtagagatagaacattggcgtgaaaagagTTAGGCACTATACGGGAATTCTTGGGGACTATACGTACAAAGTTACGCAGAATATGAAACAATTTAGTTTTGCCATAAGTAATTTAGTGGTTTTGTGAAGCAAAAATGACAAAGTTCAATGAAGATTTGTTAATTTAGGGTACGTTTGTAATAATTGGTTTTGAATATTGTTAGTAGgctatatttgaaatatttaaaaatcaagtttattaaagcattgtattttatttcaattttggaacTAGAATGTTGttaaatcttttaagttttgagactttttaaccTCACACTACGTTTTTGCAACAGTTTGGGTACGAGAGATAATGATGAGGCAACATGAATAGGTTTGTATTTAATTTGAGCATAAACGTGAAGGGATGTATGGCATTTATGGTTTTGATTTCTTGCGAATACATTTCGGTTTTTAGCTAAAAACAACCCCGCCCTGCCATTCTAGTTTCTGTTAGTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIP1	Protein pelota homolog OS=Rattus norvegicus OX=10116 GN=Pelo PE=1 SV=1
Q80X73	Protein pelota homolog OS=Mus musculus OX=10090 GN=Pelo PE=1 SV=3
Q58DV0	Protein pelota homolog OS=Bos taurus OX=9913 GN=PELO PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003488 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03464 all species →	eRF1_2	eRF1 domain 2	Domain	Interproscan
PF03463 all species →	eRF1_1	eRF1 domain 1	Domain	Interproscan
PF03465 all species →	eRF1_3	eRF1 domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005141 all species →	Domain	eRF1 domain 2	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR005140 all species →	Domain	eRF1 domain 1/Pelota-like	Interproscan
IPR038069 all species →	Homologous_superfamily	Pelota/DOM34, N-terminal domain	Interproscan
IPR004405 all species →	Family	Translation release factor pelota	Interproscan
IPR005142 all species →	Domain	eRF1 domain 3	Interproscan
IPR042226 all species →	Homologous_superfamily	eRF1, domain 2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10853 all species →	PELOTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070481 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, non-stop decay	Interproscan
GO:0070966 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, no-go decay	Interproscan
GO:0071025 all species →	Biological Process	RNA surveillance	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032790 all species →	Biological Process	ribosome disassembly	Interproscan
GO:0070651 all species →	Biological Process	nonfunctional rRNA decay	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06965	PELO, DOM34, pelA; protein pelota	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.