Gene detail

Detailed information of ENSCIQP00000024253.1 in Millepora alcicornis

Genomic Location: chr9:166319839...166357985
NR annotation: XP_047141943.1, PHD finger protein 12 [Hydra vulgaris]
Species Millepora alcicornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSCIQT00000028422

aagctgaagaaaagaaaaagaacagaaATGAATAAGTAACAAGTTAATAAATCAGACACTAAACATTTCCTTGTTTTGTACTGTAAAATACAAGCACTGATTCAGTGATATCGACCTCGATGTCGACCTCGATGTCAGTGATATCAATGTCAATGAACTCGTGCTTGTATTTCCAAGTACAAAACGGCGAGACGTTTAGTGTTCGAAGAAAAATAATTGCATAGGAGAGCAACGAAGCAGACTCATATCACGAAACCAGTAAAGTTGAAGAAGAAAAAGTGAATAATGAAGAACAATCAATGGAACCTGATTCCACATCTTCCGTGTCGCAATCCCATAGCGAAAATGAGAATAGAGCATCTGCAACATCTACGTCCTTCTTGCTGTGTAACGAATCTGTGGAGAGTTTGAACACAGAATTTGAGGTGGACTCACCTTCAGACAATGTAACGTCAACCAGAAAGATATCTATTGATGGTGAAATTGCAGTGTCATGTATAAGCTCTGCATCCAGTGAGCTGGCGGTTTTCGCGAGTCCTGATGACGTGCAAGGACTGACCGATTCCACAAACAGTTTATTAAGTACCAAAACCACAGGATCAAGGAGCACTCCCGTTGTTGGTGCAATAACGGCAGATGTAGCCAAAGATCCCACATTAAGCCAGCTGGACGAACGGTTAGTCCGCGTGTTAGCTTATCAACGACTGCAGCAGTTGGGTGGCAAGAAGGGATTTTTAACGCCAAAGTTGAGCAAGCCTGGAATCACTGAAAAGTTGAAATGCACCATTACAACTGAAACAAAAAAAGCGATTGCAGTGTTTACTCCACTGAACAAGTCAGGGCCAGCTTGCTACATGAGGTACAACACGTTCAATGCCGGACAAGGTGCAGATATGGATCTTTGCTTGGAGCATTATGGTTATTGCAATTTCGTTTCTTCCAAGCAGTCAACAATCTTCTATGATGAGGAGACGAGACAATTCGAATTACTGAACTACTCAGAACACGGTACAATTGTTGATAACGTTTTATACTCATGTGACTTCTCGGAAAAACAGAAATCTAATTACACCTCCTCGCATGCAAAATTTGACAACAATTCAAAGTATCTGTGCTTACTTGAAAAGAAACGCAAACCACCCGTCGGTAGAACCACCAAGGGCCTGGGTGTTGAGTATATCACACGCGGTTGTGGCTGTAGAGCAAGTGCGTCAAGTCTAATTGGTGGAAGTGGGGCAGGATGGGAAGGCACTGCTGTATTGCATCATGGGAGTTACGTAAAATTTGGATGTTTACATTTTATATTCAGTATAGTTGAATGTGCACCAAATGCTGttgacaaatcaaatcaaaatcttGCTCCAGATAAAATAGCAAACCAGAGTTTGAATCCAGTTATGGCTCAATCCATGCACAAGCCGCCTGAGACGTAATTCGTGAACGAGAAGACACAGAGCAGTCAGAGTCGGTGATAGATACTGTCATGAAGCTGATCAGAAATTAGGCTTGATGACTATTCAACTCGATTGAGAGGCAGGCTAATAGTGTAGAGTCGAATCAAAACTTCCGTTTCATTTTCAGATGTATCGATAAGAATTCCGAAGTCATCATTGTTATGGATTGGTTCTCCAGGTTTCCGTAcaaaaaagtttgatatagtCATAAGATAATGTGCAGTGAAAGGCGAGCTTATGCAGATAAGAATAATATTGTTGCTGAAAGAGATCATGAAATGTTttggaagaaaatgttttgatagcTTTATTGAAACTgttgcaatgttttgtaattgttACAATTATTGTccctgaaaagaacaaaagtaaagacatttaaatttGGAATTCTTTAGAACGAAGCCAATTTTACGGGTAGAACAGAGATAAGAGAAACATATAAAGCATACTTCATACTTTCGTTTTACTAGTTCTAAGATTATTGCAGGAGCGTGAAGCTTTAGTAGTCTGTTGTAGTTCTTTAGGATACACAAAATAGTTCTCAAACGAAATTaagtatcagcatttttcagTCGAATCATTGATCGAGTGCCACACATTCAAGGAAGCAAATTTTTTGAGACTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SPL2	PHD finger protein 12 OS=Mus musculus OX=10090 GN=Phf12 PE=1 SV=1
Q96QT6	PHD finger protein 12 OS=Homo sapiens OX=9606 GN=PHF12 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005117 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for ENSCIQP00000024253.1 in Millepora alcicornis.

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46309 all species →	PHD FINGER PROTEIN 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0070822 all species →	Cellular Component	Sin3-type complex	Interproscan
GO:0140110 all species →	Molecular Function	transcription regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSCIQP00000024253.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.