Gene detail

Detailed information of ENSDJXP00000003867.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_028514273.1, ras-specific guanine nucleotide-releasing factor 1 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDJXT00000004547

ATGATGAAGTTAGTGAAACAGAAAACATTCGAAAAAATCTGGCTATCGAACGTTTGTTTACAGATGGTTGCGAATTTTTGTTGGATTCGAACGAAGTCTTTATTCGACAAGAAAGGTAAAATAAATCTTGCAAACACAACTTTAATCGAAGATATCGTCGATGAAGATATTGATCTTGTCAGTGTACCATCATCCGACTGCAGCAACCTAGCATTCAAACTGGTCATAACTGAAGAGTGGTCAAATCATAAAATTATATTGATGGCCGTAACAAAAGACGAAAAAGCATCATGGACGAGCGATATTAGTCAGtGTATTGAAAACTTAAAGAACCCCTGCGAAGAAGAGCCAGTATCATTTCAATCTCGTAGAAGTCTGCTAAGTATCAgGTCTGATCCACGTCTGTTTAATGATGACAAGGACATTAAGTACAGCAAGGTATTGGATTCGACTCGTTTACCTCGGATTCGACACGCGACAGTACAACGGCTACTGGAACGGTTACTAGATGTGCGTTTCATGACAATTGAATTCTTCAATACGTTTTTAACGACACATACAATCTTCACAACATCACAGATTGTGTTGGAAACAATCATTGAATTTTATAATGCAAGAAAGACAATCTCCGAGCCTCAAATTAATGAAATATGCGACTGCAAGAAAGATCAAGACAAATGGGGAAGCTCTCCGGATATCAACCACGCCCGTAAAGatAAGCCTTGCACCAATTTAAGCGTTCCTGGTTACACTTCCAACAAAAATGCAAGTCCTGTTTACTCTAATTCAAACCTGCAGCTGCCAGAATTCATCCCGAATAGACGTCATTCATCTCCACCAGATCTTGCTGTAGGTGTTTCAGTGTTCAATCTGATGGAGAAACATAATTCACATTCAAGTATTTCTAGTGAGACAGAGGCTAAATCACAAATTAGGCTCTCCGGAGGCACGTCGCCGACTGTaaacagctttttttattttcctgataATAAGAATGGTGTAATCGATGAAAGGCTAAGGCTCACTACAGATCCAAAGAAATCACCCACCCATCCATTTTTCTTGAAGTCACCGCCAAAAAGTCGAAAAGAGATGAAGGAAAACAGGGAGAAAGTACAACCCAAAGTAGGGAGAAAATTGTCGGAGGAATTTATTAGTAAGAAAACGTTGAAACATCTGCACAGGGCGTCATTACCAAATacgcaaatttttaaattcgatCTAGATCGAAGAATAACTTCCCCTAAAGCGCGTCGAAAGGAAGCTAACAACGGTAGAAGCAGGGATTATGAACTAACAGCAAAACATAAACTTTTAAATGAGAATCACGATATCTTTTTCTATGGTCGAGATGAATTTCAAAAAAGCCCCAAAAGTCCTCTAAAAACTCCACCCACTCCTGGTGTTGTCATCACGTCATCTAGAGCATCGCAAAGAAGAAGTAGTATGACGCATGCTGCTGTCGCGTTTGCCGCAGCGACCGCTGGCGCCACTTCGTCAACAGCTGCGTCACCAAACGCACTTAATCgttcaaaatttaatttcaaattcAGCAGTGATGACGACGGTGGGAATATTGTCACTAAAAGagctttgaaaattttaaagcattGGATTTCCAAGCAACCCGAGACGTTCAAATTGGATCAAACTCTAAGAGAAGATGTTGAGAAATTTCTTAACCAAATACTACAGACAGATGATACAACACCTCTGGACAGTAAGCTAGCTAACACCATTTTAAGGTCTTTATTGCAAGAAGATAGCCCTGCAGCAGACATTCTAACTGTTTCTAAGGATTTGAATGATATATCCTGCGTCAGCGAGCAGTTTTCAATAGTTCAGCTTGCAGAACAAATGACTTTGATCGATCACACACTCATGGCGCGGGTTCCAACCAGGGAATTCTTATCAACTGCATGGATgggagaagaaaaagaaaaaaatgctcCCAACTTGTTAAAAGCAATTGAACGATTTAATCTGACTAGCCGCTTGATTGCATCAGAAATCATTTCAAAATCCACAAGTGCTGGTAGAGCAAACGTTATTGAAAAGTGGGCCATGGTTGCTGATGCGTGTCGCTGTTTGCATAACTTTAATGCCGTGTTGACCATCATGACGGCCTTTACGTCATCTGCTATATTTAGGTTGAAGAAAACATGGGAGAAAGTGTCCAAACAGATTCAAACGCTAATTGAAAAGTTGAAGAACATGGTATCTGCTGAGGGAAGGTTTCGAAACATGAGAGAGGTCCTGAAATGCTGTGATCCGCCCTGTGTTCCATACTTAGGATTTTATCTGACAGATTTAGCTTTCATTGAAGAAAGTACGTCGATGGTTAAAGACACAGGCTTGGTCAATTTCTCTAAAATGAAAATGGTCTCTAATATTGTTCATGAGATTCGATTCTACCAGACGACGTCATACAGAATCACGAAAAAACAACAGATATTCAACTATTTACTTCAAACAGCGGACAAACTAAGGAGTGATGAAGACATTTACCAAGAATCTTTGATATTAGAGCAGAAACGTGCAGCTATGTCTGGTTCTAGGATTAAATTTTCATTCCCTTTCGGCCACAACTAA

Transcript

ENSDJXT00000004547

attccAACATACATTGCAACGCTTCAAAAACTATTATCTTTAACACCTTTTGATCACGTGGAAAGGAAATCGTTGGAGCAGTCCCAAAGTGTTCTTGAAGAGCTTTCGACAGTCATGCATGATGAAGTTAGTGAAACAGAAAACATTCGAAAAAATCTGGCTATCGAACGTTTGTTTACAGATGGTTGCGAATTTTTGTTGGATTCGAACGAAGTCTTTATTCGACAAGAAAGGTAAAATAAATCTTGCAAACACAACTTTAATCGAAGATATCGTCGATGAAGATATTGATCTTGTCAGTGTACCATCATCCGACTGCAGCAACCTAGCATTCAAACTGGTCATAACTGAAGAGTGGTCAAATCATAAAATTATATTGATGGCCGTAACAAAAGACGAAAAAGCATCATGGACGAGCGATATTAGTCAGtGTATTGAAAACTTAAAGAACCCCTGCGAAGAAGAGCCAGTATCATTTCAATCTCGTAGAAGTCTGCTAAGTATCAgGTCTGATCCACGTCTGTTTAATGATGACAAGGACATTAAGTACAGCAAGGTATTGGATTCGACTCGTTTACCTCGGATTCGACACGCGACAGTACAACGGCTACTGGAACGGTTACTAGATGTGCGTTTCATGACAATTGAATTCTTCAATACGTTTTTAACGACACATACAATCTTCACAACATCACAGATTGTGTTGGAAACAATCATTGAATTTTATAATGCAAGAAAGACAATCTCCGAGCCTCAAATTAATGAAATATGCGACTGCAAGAAAGATCAAGACAAATGGGGAAGCTCTCCGGATATCAACCACGCCCGTAAAGatAAGCCTTGCACCAATTTAAGCGTTCCTGGTTACACTTCCAACAAAAATGCAAGTCCTGTTTACTCTAATTCAAACCTGCAGCTGCCAGAATTCATCCCGAATAGACGTCATTCATCTCCACCAGATCTTGCTGTAGGTGTTTCAGTGTTCAATCTGATGGAGAAACATAATTCACATTCAAGTATTTCTAGTGAGACAGAGGCTAAATCACAAATTAGGCTCTCCGGAGGCACGTCGCCGACTGTaaacagctttttttattttcctgataATAAGAATGGTGTAATCGATGAAAGGCTAAGGCTCACTACAGATCCAAAGAAATCACCCACCCATCCATTTTTCTTGAAGTCACCGCCAAAAAGTCGAAAAGAGATGAAGGAAAACAGGGAGAAAGTACAACCCAAAGTAGGGAGAAAATTGTCGGAGGAATTTATTAGTAAGAAAACGTTGAAACATCTGCACAGGGCGTCATTACCAAATacgcaaatttttaaattcgatCTAGATCGAAGAATAACTTCCCCTAAAGCGCGTCGAAAGGAAGCTAACAACGGTAGAAGCAGGGATTATGAACTAACAGCAAAACATAAACTTTTAAATGAGAATCACGATATCTTTTTCTATGGTCGAGATGAATTTCAAAAAAGCCCCAAAAGTCCTCTAAAAACTCCACCCACTCCTGGTGTTGTCATCACGTCATCTAGAGCATCGCAAAGAAGAAGTAGTATGACGCATGCTGCTGTCGCGTTTGCCGCAGCGACCGCTGGCGCCACTTCGTCAACAGCTGCGTCACCAAACGCACTTAATCgttcaaaatttaatttcaaattcAGCAGTGATGACGACGGTGGGAATATTGTCACTAAAAGagctttgaaaattttaaagcattGGATTTCCAAGCAACCCGAGACGTTCAAATTGGATCAAACTCTAAGAGAAGATGTTGAGAAATTTCTTAACCAAATACTACAGACAGATGATACAACACCTCTGGACAGTAAGCTAGCTAACACCATTTTAAGGTCTTTATTGCAAGAAGATAGCCCTGCAGCAGACATTCTAACTGTTTCTAAGGATTTGAATGATATATCCTGCGTCAGCGAGCAGTTTTCAATAGTTCAGCTTGCAGAACAAATGACTTTGATCGATCACACACTCATGGCGCGGGTTCCAACCAGGGAATTCTTATCAACTGCATGGATgggagaagaaaaagaaaaaaatgctcCCAACTTGTTAAAAGCAATTGAACGATTTAATCTGACTAGCCGCTTGATTGCATCAGAAATCATTTCAAAATCCACAAGTGCTGGTAGAGCAAACGTTATTGAAAAGTGGGCCATGGTTGCTGATGCGTGTCGCTGTTTGCATAACTTTAATGCCGTGTTGACCATCATGACGGCCTTTACGTCATCTGCTATATTTAGGTTGAAGAAAACATGGGAGAAAGTGTCCAAACAGATTCAAACGCTAATTGAAAAGTTGAAGAACATGGTATCTGCTGAGGGAAGGTTTCGAAACATGAGAGAGGTCCTGAAATGCTGTGATCCGCCCTGTGTTCCATACTTAGGATTTTATCTGACAGATTTAGCTTTCATTGAAGAAAGTACGTCGATGGTTAAAGACACAGGCTTGGTCAATTTCTCTAAAATGAAAATGGTCTCTAATATTGTTCATGAGATTCGATTCTACCAGACGACGTCATACAGAATCACGAAAAAACAACAGATATTCAACTATTTACTTCAAACAGCGGACAAACTAAGGAGTGATGAAGACATTTACCAAGAATCTTTGATATTAGAGCAGAAACGTGCAGCTATGTCTGGTTCTAGGATTAAATTTTCATTCCCTTTCGGCCACAACTAACACATATAAAGGTCGGATGCTTGGTGCAAAGTAAACTTGGATGGCAACAGTAATGGCAATATTGATGACAATGTTAATGACGATAACTtactgaaaaggaaaaaaatgactAGTAGATTATATGAACAATTGCATTTGGATCGATTCCTGATGTATTTAACTTTAGGATGTGATACAGTTTGATAATTTTCCTTTCTGGTTTTGTGGGTTTAGCaatgcttattttttaaacttagaaaaagcaatttttaattttattgaatttataaaatgtttatttttatcgtAGCGTTTTGTGACAGTTAGTATACCCTACTTTTACCATTAGAGGAAGGACGTTGAGTGTGGAAGGGGCACAATGCCAATGGCAGTTCTTCTATTCCGATATTGGACATGATGAAGCCTTGATATTTTCTGACTATCGATGCATTTTTATTACGGATCTTTTGAGAAACTTTTAGAATTTGACACCTGCTAGATTGAGAG

Protein

Uniprot

Uniprot term	Description
P27671	Ras-specific guanine nucleotide-releasing factor 1 OS=Mus musculus OX=10090 GN=Rasgrf1 PE=1 SV=2
P28818	Ras-specific guanine nucleotide-releasing factor 1 OS=Rattus norvegicus OX=10116 GN=Rasgrf1 PE=1 SV=1
Q13972	Ras-specific guanine nucleotide-releasing factor 1 OS=Homo sapiens OX=9606 GN=RASGRF1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00618	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03099	SOS; son of sevenless	-	Endocrine resistance	ko01522	deepkoala