Genomic Location: JASGCC010000010.1:96523...125657
NR annotation: XP_047134645.1, DNA-directed RNA polymerase, mitochondrial-like [Hydra vulgaris]
Species Hydractinia echinata · all data for this species · gene families
| CDS |
| ENSDJXT00000006413 |
| Transcript |
| ENSDJXT00000006413 |
| Protein |
| ENSDJXP00000005576.1 |
| UniProt accession | Description |
|---|---|
| Q8BKF1 | DNA-directed RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Polrmt PE=1 SV=1 |
| O00411 | DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens OX=9606 GN=POLRMT PE=1 SV=2 |
| P13433 | DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPO41 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005077 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00940 all species → | RNA_pol | DNA-dependent RNA polymerase | Family | Interproscan |
| PF14700 all species → | RPOL_N | DNA-directed RNA polymerase N-terminal | Domain | Interproscan |
| PF13812 all species → | PPR_3 | Pentatricopeptide repeat domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002092 all species → | Family | DNA-directed RNA polymerase, phage-type | Interproscan |
| IPR046950 all species → | Domain | DNA-directed RNA polymerase, C-terminal domain, phage-type | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR029262 all species → | Domain | DNA-directed RNA polymerase, N-terminal | Interproscan |
| IPR037159 all species → | Homologous_superfamily | DNA-directed RNA polymerase, N-terminal domain superfamily | Interproscan |
| IPR002885 all species → | Repeat | Pentatricopeptide repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10102 all species → | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0001018 all species → | Molecular Function | mitochondrial promoter sequence-specific DNA binding | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003899 all species → | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0006351 all species → | Biological Process | DNA-templated transcription | Interproscan |
| GO:0006390 all species → | Biological Process | mitochondrial transcription | Interproscan |
| GO:0034245 all species → | Cellular Component | mitochondrial DNA-directed RNA polymerase complex | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10908 | POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial | EC:2.7.7.6 | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Hydractinia echinata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydractinia echinata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
