Detailed information of ENSDJXP00000009745.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_047136671.1, collagen alpha-1(II) chain [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9YIB4Collagen alpha-1(I) chain OS=Cynops pyrrhogaster OX=8330 GN=COL1A1 PE=2 SV=1
P28481Collagen alpha-1(II) chain OS=Mus musculus OX=10090 GN=Col2a1 PE=1 SV=2
P05539Collagen alpha-1(II) chain OS=Rattus norvegicus OX=10116 GN=Col2a1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF00095WAPWAP-type (Whey Acidic Protein) 'four-disulfide core'DomainInterproscan
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR008197DomainWAP-type 'four-disulfide core' domainInterproscan
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR036645Homologous_superfamilyElafin-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0006910Biological Processphagocytosis, recognitionInterproscan
GO:0030169Molecular Functionlow-density lipoprotein particle bindingInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0038187Molecular Functionpattern recognition receptor activityInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0030414Molecular Functionpeptidase inhibitor activityInterproscan
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan

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