Gene detail

Detailed information of ENSDJXP00000016554.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_012560932.1, glycine-rich RNA-binding protein 10 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDJXT00000018733

attattaaaacctaaagtattttatcttttttccttaaaaataatatgaatgTGAGCCTTATTGTGCAAACATATATTCTTTGCCTGGCGCATGCGCAAAGTATTAGCATGCCTTTGTGAAAACTCACCCTTTCTTTTTGAAGTTTAGACGACGGCGTCAGGCATAGGACTGATCTTAACATAAAAATGCAAGGTGGTGAAAGAATAAAGCTTTATGTTGGCTCTTTGCCTTTTGATACAAGAGGACCAGACCTTGaggaaatgttttcaaaatatggAGCACCACATAATGctCATGTGGTGATGGAAAAAGATGATGAGACAAGATCTCGTGGCTTTGGTTTTGTTGAATTCGAAACTCCAGATGAAGCAGAAGCAGCTATTAATGGATTAAATGAGACTCCACTTGGCCATAGACACATAATGGTTCAGCATGCTGGTAAGCCTGCTAGTGGTAAACCTCCACAAAGAAGAGGTAGAGGAGGTCCTGGTGGTGGAAGAGGGGGTCGAGGTTTTAGTGGTGGGTTTGGTGGACGAGGTGGAAGAGGAGGTGGTTTCGATCGAGGAGGTAGAGGTGGAAGGGGTGGACGTGGTGGATTTGACCGTGGTGATAGAGGTGGAAGGGGAGGCGGTGGACGTGGTGGATATGGTGGTAGAGGAGGACGAGGAAGAGGTGGGTATGGAAATGATAGCTTTAGTAGTGGAGGTGGTTATAATCAAGGAGGAGGATATGGTGGAAACAGTGGAAGTAACTATAACAGTAATAATTATGGTGGAAATTACAGTAGTGGTCAAGGGGGTGGATATGGAGGAAACAGTTATGGTGGTTCTAACCAAGCTGCATCAGGTAGTTATGATAGTGCTCAAACTTCATATGGTGGTGGCCAGAATTCATATGGTGCAAATCAAGGTGGTTATGGTGGCAGTACAGGTGGATATGGAGCGTCTCAACAGAGCAACCAGTCAAGCTATGGAGCCAATCAACAAAGTTATGGTAGTAGTAACAGTTTTGGTGGTGGCTATGCAAGTAGTGGACAAAACTCATATGGTAGCAGCGGCGGTTATGGACAACAAAGCACCAACACTCAAGGTGGTGGTGGGGGTAGAAgtGACTGGTATTGAGCGGGCCTACATTGATCATCTCCTGCCTATCTTAATGAAGTTGAAAGTGACATTGTGGCCTTTATAGAGGTCTTTGTACATATAAATTTATCCACTTCAAGAAGAAACTTATTTGGACTACATTACACCTGTAAAGAATGCAATTCGATATGAACTACAagttataatataaatatgtgGACTTCACGGAACAAGGCATATGCCTTTCAAATTGTTTGTTTATCAAGTTCCTTCAGCAAGAATAGCTTAAAGCCTTTCGTAACTGCTAGTATATTCCTGCATTCGGTCTATGATGTTACAGCTCTGAAAAACTTGCCATGAGCCACAAGTGGTCTCTGTGTTGcttttaaacagaattttttattttttaattatatgtATATTGATGATAACAGTAATCTCAATTTTCTCAATTGTATTCGTTATTTTATTCTGGTCAATGTCTGCTCAACGTTTCAAGAAATGTAAaactaatttaaattttctaactATATCCGTCATTTTAATCTGGTCAATTTCTGTCTGTTGTCCTCAAggttttacagaattttcaggATTTTGGTTTTACTCTGaagatttgttgaaaatattaaatgtaaaaaaatttaaggggATAACGAAAATTAAGAAACGCACAGTTGTTTCTTCTATTAGATTCTGACCTGCCTGTTCTTTATAAACGTGTTCACTTGTGAGGGAGGGAGGGCAACACAGCAAGAGGATGCAGATATATTAGTAAAAAGAATGACCAATTATATAAAAGcaataaattatatttcaatTCCTCATCAACAAAGTTGAAGTTACATAGCTGCCTGGTTTTTTGGAATTTGTGAATAAAGAGACGACCAACAAGAATTCAATCAGTTATATAGGCCTGGACCAACAAGAATTTGATCACCTTATATAGGTCTGGACCGACAAGAATTTGACCACCTCATATAGGTCTGGACCGACAAGAATTTGATCAGTTTATTAAGGCCTGA

Protein

Uniprot

Uniprot term	Description
Q9DED4	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1
Q28IQ9	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1
Q9ZUU4	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan