Gene detail

Detailed information of ENSDJXP00000016611.1 in Hydractinia echinata

Genomic Location: not available for this species
NR annotation: XP_047137263.1, breast cancer type 1 susceptibility protein homolog isoform X2 [Hydra vulgaris]
Species abbreviation HECHI · all data for this species · gene families

Sequence

CDS

ENSDJXT00000018793

ATGGATGCACCTGACAACACTGTTACAGAAGTTAGAAAATTATTACAAAGTCTACAAAAGAGCTTTCAATGCACAATATgCTTGGATTTGTTGTCTCAACCAATATCAACTAAGTGCAATCATCAATTTTGCAGTCAATGTATAAAAGAACTGCTGGTGAAAAGCGACAAGAAGAGGCCAGTTACTTGTCCTCTTTGCAAAACTAAAATTACAAAGAGtaTAAATTCTAATCCTCAAATAGCAGAGATAGTAACCTGTGTCAGAGATGTCTGCAATGCTGCTGATGATGATTGTGAAGGAATAGGTAATTGTGGGTATTTCCATGAATATTTTGTAGTCACTGTAAATGTTATTTTACAACCGCCAAACGTAAACAAATCGTGCCATATACAACTCTCGCAAATTTCTGTTAACGAATCCCCTGGTAGCATTTCCTTTCCTGGTAGTAAGAAATCCGTCGTTAGTACTTGCAGAAGGAAAGAGAGTCAGTCATTAACAGCATGGAAATTATCATTAGGTAATACCATAAATGAGACCGTTGACATCAAGTCATTTATCAATAATATCGAAAGTCCTAATAAAGACCACTCCATGTTTGGTAACATATCCTTTTCAAAAGTTCCGCTTCCTTTGAAAAGTGGTGTAATGAAGCCAGTTAAAATCATGTCTGCTGAAAGAATATCTGCAACAGAGGCTGTTGtatcaataaaatataaaatgactGTTGAAAATTTAAGTTGTGATTTATACACAGGAATGCAGAAGGGATTGATCACAGAGAGATCGCCTCAAAAAGAATGTAACTCGGAGGTTTTAACTGGTACGATACTTAAAAACGAAGTTTTAGTTAGTGAAGAtaatcaagaaaaacaaattgttCAATCAAGTAAAGATAATGAttttgaagaagaaaataaaaacatagcgAGTAATAAACATTTAATGAACTCAAAAGACTGTGTGGACCAAAATATGTTGTTACCAGGTAAGCAGTTTTTGTTGTCATCAAAAGGCAACAGTGAAGAATTAATTCCACCCACACCACCTGGAACGAAAGCACAAACATCATTCAGAAAGATAAACACTTCTAATATTGCTGAAAATCATAGATCAATGCATAGCAAAAGTGTAATTCAAGATTTTGAATCACATGTGAAGATACAATATACAGGTGAAAGTGATCAGTTGCTTTATGATGAAGCTGAAAAAATGGATCTTGCAAAATCAAATGTGGTTAATAACCAGGTTGAGACTTTAACATCAAAGAAAGCTAATGAAACTGCTGATGTCACTGATGCATTCATGTGTGACATAGAAGATGAAATTGATGTGTATACgaatgaaaagaaagaaaaatacgtTTCAGATGGAGATAAAAGTGAAAATGAGGAAAACCTGAGCGAAAGTCTAGTTGGCAGTTGCACGAATGCTAGTTGTGTTGGTACGGTAGACGGCaacgaaaaaaatgaaaacagtgTTAGTCAAAAAGAGAAAGAACGACTCGATCTTGATTCATTTTCCGAGAATAAAGAAGTTTTTGACCTTGGCAAGAAGTTTCATGAGAACATTAAGCAACTTAAACGTGAAAAACAATTAAGTCAgaacagtgttgattttgatgTTTCAGAACCTGATTTAAtagtagtcgaatgtataaacaGTAAAAAAGGCGGGAGAAAAAGAAGTGACGACGGAGTTGAATCCCAAGTAAACACTGGTGCAGTAAAGGAGAAGATGAATACGCATAGTAGTGACAGTGAAGATGAGGATTTAACACTTAAaagaaagaagagaaagaaGGAGGCGAAAATTGTAAGTGATGAAGAAACTAGTAGTGGTTGTGAGGAGATTCCAATAAGTAACTTGAAACATAAGAAGAGTAAGAAACCAAGAAGGAGTAGTGAGGATGGTCGTCAACCACAGGAGGTAGATCAGTTGCAGTCTGTTACCTTGTGTGATACAGATAACGATgatgatgttgttgatgataaTGATGAGAAGGTTCTACCACCGTGTATCAGTACAACAAAGAAGACTGGAGGTAGTGATAGTAATAGTAATAAGTTATTGAATCAGAAAGCTGCAAAGCGTGAACGACGTCGTTTGGAAAGAGACAGACTTGCTGAGCACTTAAAGAAATACATtgatgaaataaagaaaaacgaTGAGGCTGAAAGCAGTGATGACGACATTTTAGAGAGAACAGCTTTTGAAGTGAAAGAAATGCTTgatgaaaaaaacaaagtatCGGTTGGTGAAGATAAGAACTTCTTATTTGCCAGTGAGCATCTGAAACAACATAAAGATCTTGAGAAAACAAATTATGTCTTAAAAGATGAAAACAATGCAGTAGCCAAAATGTCGTATACATATAAATATCTCATGAGCTTAGTGGCTGGCTTATGGATTGAGAAGTATGAAGTGAAAGGTGACCCCACCGCTGATCATCAAGATATTCCGAAATTATACAGACGAGCTCGAAGCAAGGTATTACATGTTTATTTTACACGCTCCCGAACCCAATTGTCCACTAATAATACATGTTTATGCTGTTTTTTGGGGTTGGGGCATAGCATCCAGTTTAAAATTGGGATACCAGGAAAAATCAAACCAACTTCTCCcaattgtattttaaaaaatgtgggTTATACGTTATGA

Transcript

ENSDJXT00000018793

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q864U1	Breast cancer type 1 susceptibility protein homolog OS=Bos taurus OX=9913 GN=BRCA1 PE=1 SV=1
Q95153	Breast cancer type 1 susceptibility protein homolog OS=Canis lupus familiaris OX=9615 GN=BRCA1 PE=3 SV=1
Q6J6I8	Breast cancer type 1 susceptibility protein homolog OS=Gorilla gorilla gorilla OX=9595 GN=BRCA1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031099 all species →	Family	BRCA1-associated	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13763 all species →	BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0031436 all species →	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0035066 all species →	Biological Process	obsolete positive regulation of histone acetylation	Interproscan
GO:0035067 all species →	Biological Process	obsolete negative regulation of histone acetylation	Interproscan
GO:0045717 all species →	Biological Process	negative regulation of fatty acid biosynthetic process	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDJXP00000016611.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.