Gene detail

Detailed information of ENSDJXP00000018098.1 in Hydractinia echinata

Genomic Location: not available for this species
NR annotation: XP_047130028.1, ribosome biogenesis protein bop1-B [Hydra vulgaris]
Species abbreviation HECHI · all data for this species · gene families

Sequence

CDS

ENSDJXT00000020420

ATGCAAAAATGGGTATTTAACAATTTGTTACCAATAGCAAAGAAAATTTTGATGCTACTGAAAACTCATGCAAAGGTGGATGACTATCGTGTACATGTAAAGTCAGATTTAAGTGGTGTATACTGTAGGTTTATTATCTGTGTTAAAATTCATTATAAAGTTTATTCTATATTCTATATTTTTGTTGctcacaaaaagaaaaaaatgtcaaaaaggaaacaaaaagaaaaaaacacaaaaatcaacGATGAGCTCTCATTAAAAGAAATAGACGACAAGGATGATTTGAGTGATAGTGATGAAAGTGTTTACTCAGGACTGGAAGAAGAACAGGATTCTGAatcagaagaagaagaaatacgGTCCAGTGATGATGAAAATGGTGATGAAGAAGACATAACGAAAGGTGAAGTCTCAGATAATAATGAGTTTGAAAATGACCAGGACAGTAAAAGTGATGGTGGAGAAAGCAGTGGTGATGAcaatgatgatgaagatgatggaCTAAGtgtaaatttgttgaaaaatacaAACAGCGATCTCGTTAACACAAGTATAAGAGATAAAGATCAAGTGATCAAATCAAAAGCACTTTTTGAAGATGTTGATACTTCAGATGAAGAGGACATTCGCAACACTGTGGGAAATATTCCAATGAAGTGGTATGATGAATATGATCATATTGGTTACAATTTGTCTGGTTCAAAgattatgaaaaaaatacaagGAGATCAGcttGATGAATTTTTGGCTAAAATGGATGATCCAGATTATGGGAGAACTGTATATGATAAACTTAACATGGAAGACATTAAACTTTCTGACGAAGAAATTGCAATCATTCAACGAGTGCAAGGTGGTCAATTCCCTGAGAAGGATTTTGATCAGTACGAGCCATATGTTGATTATTTTACTGGTGACAAAATGGTTCACCCAATTAAAGATAATCCGGCATCAAAGAGTAGTTTCATCCCTTCAAAGTGGGAACATAAGAGAGTTATAAAAATCGTACGTGCAATAAGAAATGGCTGGATCAAACCAAAACAAAGTTCTGATGGAAAACCAAAATATTATTTACTATGGGGTAAAGATGATATTTCAAATAGCCATCCCATGCATTGGCCTGCACCAAAACTAAAATTACCTGGTCATGAGGAATCTTATAATCCACCACCTGAGTATCTCCCAACAGATGAAGAAAGATCAGCTTGGGAAGCATTGGATCTGGAAGATAGACCTCAAAATTTCCTTTCTAAAAAATATGATGCTCTAAGAAAAGTGCCTGGATATTCAAATTTCATTCAAGAAAAGTTTGAACGATGTCTAGATTTATATTTGTGTCCACGACAAAGAAAAATTAGGctacAAGTGGATCCAGAAGATTTGATACCAAAGCTTCCACGCCCAAAAGATTTGCAACCATTCCCAACAACAGAATCTCTTATTTACAAAGGACACGAAGAGGATGTTAGATGCATTTCTGTGGACTCCTCTGGACAGTGGCTCGCTTCAGGAAGTTCTGATAACACAATCCGTTTCTGGGAAGTATCAACTGGTCGTTGCATGAAAACAATAAAAGTTGATGGTACAGTCAACAGTTTACAGTGGAATCCATTAGAAACAGCTCCAATTGTTGCAGCTGCTGTagaCAATATAGTCTTAATCATAAATCCTGGTCTTGGTGATAAGCtgctttgtaaaaatattgataatcAAGTAAATTCATTTGAACAAGATGAGCAAGGAAATGACAACAATTTAGTAAAATGGAGTACAGTCTCAAAAGAAGAATACAAAAATTGCATCAGATTAAAGATTGAGCACCAAAAGGCAATCAAACAAGTTACTTGGCATTTAAAAGGAGATTATTTTTCTACTTTATTGCCTGAAGCGGAAAGTAAAGCAGTAATTATCCATCAATTTTCCAAACGAAAAAGTCAGTGTCCattcaaaaaatcaaaaggTCAAATACAGTGTGTCAAGTTTCATcctaaaagacctttcttcttTGTTGCAACGCAACGTTATGTGAGAGTGTATAACCTACAAAAACAAGAACTAACCAAAAAACTCATGTCTGGCGTGAAATGGATTTCAAGTATGGATGTCCATCCGCAGggtGACAATATTATAATTGGTAGTTATGATAAACGTTTGTGTTGGTTTGATATGGATTTGTCTTCCAAACCCTACAAAACGCTCAGacATCATAAAAAAGCTTTACGTCAAGTTGTATATCATCGTTGTTATCCACTATTCGCGTCAGCTAGTGATGACGGAAACGTCATTATTTGTCACGGCACTGTGTACAGtgACTTGATGCAAAATCCACTTATCGTTCCGTTGAAAATATTACGCGGTCACAAGATTACGAAAGAACTAGGTGCGATTGACTGTGTGTTTCATCCACATCAACCATGGATATTCACTGCTGGTGCAGACAAAACAATACGTTTATTTACCTGA

Transcript

ENSDJXT00000020420

CAAAGTTtacattaaagtttttttgcgaGACATTCTGTTGTTTTAGAGATGCAAAAATGGGTATTTAACAATTTGTTACCAATAGCAAAGAAAATTTTGATGCTACTGAAAACTCATGCAAAGGTGGATGACTATCGTGTACATGTAAAGTCAGATTTAAGTGGTGTATACTGTAGGTTTATTATCTGTGTTAAAATTCATTATAAAGTTTATTCTATATTCTATATTTTTGTTGctcacaaaaagaaaaaaatgtcaaaaaggaaacaaaaagaaaaaaacacaaaaatcaacGATGAGCTCTCATTAAAAGAAATAGACGACAAGGATGATTTGAGTGATAGTGATGAAAGTGTTTACTCAGGACTGGAAGAAGAACAGGATTCTGAatcagaagaagaagaaatacgGTCCAGTGATGATGAAAATGGTGATGAAGAAGACATAACGAAAGGTGAAGTCTCAGATAATAATGAGTTTGAAAATGACCAGGACAGTAAAAGTGATGGTGGAGAAAGCAGTGGTGATGAcaatgatgatgaagatgatggaCTAAGtgtaaatttgttgaaaaatacaAACAGCGATCTCGTTAACACAAGTATAAGAGATAAAGATCAAGTGATCAAATCAAAAGCACTTTTTGAAGATGTTGATACTTCAGATGAAGAGGACATTCGCAACACTGTGGGAAATATTCCAATGAAGTGGTATGATGAATATGATCATATTGGTTACAATTTGTCTGGTTCAAAgattatgaaaaaaatacaagGAGATCAGcttGATGAATTTTTGGCTAAAATGGATGATCCAGATTATGGGAGAACTGTATATGATAAACTTAACATGGAAGACATTAAACTTTCTGACGAAGAAATTGCAATCATTCAACGAGTGCAAGGTGGTCAATTCCCTGAGAAGGATTTTGATCAGTACGAGCCATATGTTGATTATTTTACTGGTGACAAAATGGTTCACCCAATTAAAGATAATCCGGCATCAAAGAGTAGTTTCATCCCTTCAAAGTGGGAACATAAGAGAGTTATAAAAATCGTACGTGCAATAAGAAATGGCTGGATCAAACCAAAACAAAGTTCTGATGGAAAACCAAAATATTATTTACTATGGGGTAAAGATGATATTTCAAATAGCCATCCCATGCATTGGCCTGCACCAAAACTAAAATTACCTGGTCATGAGGAATCTTATAATCCACCACCTGAGTATCTCCCAACAGATGAAGAAAGATCAGCTTGGGAAGCATTGGATCTGGAAGATAGACCTCAAAATTTCCTTTCTAAAAAATATGATGCTCTAAGAAAAGTGCCTGGATATTCAAATTTCATTCAAGAAAAGTTTGAACGATGTCTAGATTTATATTTGTGTCCACGACAAAGAAAAATTAGGctacAAGTGGATCCAGAAGATTTGATACCAAAGCTTCCACGCCCAAAAGATTTGCAACCATTCCCAACAACAGAATCTCTTATTTACAAAGGACACGAAGAGGATGTTAGATGCATTTCTGTGGACTCCTCTGGACAGTGGCTCGCTTCAGGAAGTTCTGATAACACAATCCGTTTCTGGGAAGTATCAACTGGTCGTTGCATGAAAACAATAAAAGTTGATGGTACAGTCAACAGTTTACAGTGGAATCCATTAGAAACAGCTCCAATTGTTGCAGCTGCTGTagaCAATATAGTCTTAATCATAAATCCTGGTCTTGGTGATAAGCtgctttgtaaaaatattgataatcAAGTAAATTCATTTGAACAAGATGAGCAAGGAAATGACAACAATTTAGTAAAATGGAGTACAGTCTCAAAAGAAGAATACAAAAATTGCATCAGATTAAAGATTGAGCACCAAAAGGCAATCAAACAAGTTACTTGGCATTTAAAAGGAGATTATTTTTCTACTTTATTGCCTGAAGCGGAAAGTAAAGCAGTAATTATCCATCAATTTTCCAAACGAAAAAGTCAGTGTCCattcaaaaaatcaaaaggTCAAATACAGTGTGTCAAGTTTCATcctaaaagacctttcttcttTGTTGCAACGCAACGTTATGTGAGAGTGTATAACCTACAAAAACAAGAACTAACCAAAAAACTCATGTCTGGCGTGAAATGGATTTCAAGTATGGATGTCCATCCGCAGggtGACAATATTATAATTGGTAGTTATGATAAACGTTTGTGTTGGTTTGATATGGATTTGTCTTCCAAACCCTACAAAACGCTCAGacATCATAAAAAAGCTTTACGTCAAGTTGTATATCATCGTTGTTATCCACTATTCGCGTCAGCTAGTGATGACGGAAACGTCATTATTTGTCACGGCACTGTGTACAGtgACTTGATGCAAAATCCACTTATCGTTCCGTTGAAAATATTACGCGGTCACAAGATTACGAAAGAACTAGGTGCGATTGACTGTGTGTTTCATCCACATCAACCATGGATATTCACTGCTGGTGCAGACAAAACAATACGTTTATTTACCTGATTTGTGTATCAAATATcactgaaaatatattttaatgaaaCATGGTTGTATTTAGCAAATGTGTTACGAACTGCATTTGTATTTCTTATCTCATTTCTTAAATTGTTCATTAAAATGTCTTGTGTGACATACATTCGTTACTTACTACATAACAGGTAAGTGCATACACTTGAAACTCGTAGTAGCTGATATTTCACCATCTATCACCATTCATTCGccaaaaaatttagaaaactcTTAAGCAGGATATGTCACGCCCATTTCAAAAGGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IHS2	Ribosome biogenesis protein bop1 OS=Xenopus tropicalis OX=8364 GN=bop1 PE=2 SV=1
Q7ZXX9	Ribosome biogenesis protein bop1-B OS=Xenopus laevis OX=8355 GN=bop1-b PE=2 SV=1
Q7T0W1	Ribosome biogenesis protein bop1-A OS=Xenopus laevis OX=8355 GN=bop1-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005052 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08145 all species →	BOP1NT	BOP1NT (NUC169) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR028598 all species →	Family	WD repeat BOP1/Erb1	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR012953 all species →	Domain	BOP1, N-terminal domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17605 all species →	RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0030687 all species →	Cellular Component	preribosome, large subunit precursor	Interproscan
GO:0043021 all species →	Molecular Function	ribonucleoprotein complex binding	Interproscan
GO:0070545 all species →	Cellular Component	PeBoW complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14824	ERB1, BOP1; ribosome biogenesis protein ERB1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.