Gene detail

Detailed information of ENSDJXP00000019458.1 in Hydractinia echinata

Genomic Location: not available for this species
NR annotation: XP_002155289.2, RNA-binding region-containing protein 3 [Hydra vulgaris]
Species abbreviation HECHI · all data for this species · gene families

Sequence

CDS

Transcript

ENSDJXT00000022033

gtagtgTGACGTAACGAGTATGCACAATATTCAGATCGGAATAATGATAGCGAGTCTTCTATTCAATGccgcaaacaaacaaaatttaaaacccCAGTACTTCTTTATTATTCAGTAAATGCCCCTAGCTCATCACCATTTTGATTGCAGGTAGTTACGCTCCAGTATAAATGATTCACAATGGCACGTGCCCACAAACCCAGTAACTCAAATCCTGAAAAGAAGAGGTAAAGGAACTAAAACAGTTCGTATCAAAAGTAGAAATGTTGAAACTACTTGTCAAGAATGTTCCTACAGACTTTTCTGATGGTGAAAAGGATCAATTCTTCTCATTATTTGGGGCAACAGAAGTAATATGTTTTCCTAAAAGTGGAAAGATGAGAAATTGTTGTTATctgacatttccagacataacAACTGCAAAGCAAGGACTTTATACAATACATCAATTTGAGGTTCTTGGACAAAAACTGGTAGCTGAATATGCTAAGCCAAGCCATATTGATTCTGCAGATCAGATTTATTGTAAGGAAgttcttgaaaaaaaagtgtttattgGAACTAACTTGGAAGAGAAAAAGAAAGTTCAAACAAGAGAGATTCCTGAAGAAATTCAGAATGGTATATGTTCTAATCTAAACATCAATCATGACTTTCCTGACCACTTGGTGTACAAATATCCAGATCCAAATGTGATGATATTAACAAATATTGCCAATGCACTAGCAGCTGTGCCTAAGTTTTATATCCAAGTGTTACATTTAAtgaacaaaatgaatcttcCTCCTCCCTTTGCAACAGTAACTTTAACCCCGCCTCTTCCTGGTGATAGTGTAATTTTGCAGGACGCATCTGTTGATACTTCTGATttacaagaatttatttctagtGATGAATCTGAAATCGAAAGTGATACTGACCATAATAAGAAACATGAAATTTTTAGCTCCAATCGAATGCTGATGGGAcctggaaaaaaaagaaagcgtTTAAAACCCTTGGCTAAAGTGGAACAAGAGAAACTTAATATAGTGAAAACAAAGAGCTCTCAACCTGTTGAAAGTGTATTTGAGTTATCATCTTCATCAAAACGATATGAATTTCAGTTAGCAAGCAGCATCAAAGAAGCAGTTGAGAGAAAGAACCAACCCGCGATACATTATAATGTTTTTGATGAGAGGGGTGAGTTTGGGAAGATTGCACCATTAAGAAAAGATAGCATCAGTCCCTTAAAcgatgaagatgatgaagaagaggaagaactTGATGACGATAGAAATGCTGATTATATAACATCGACACAACTGAAAGAAAACCGAATTTCAGAAAAGGAAGTTTTAACGATGaatcagtttaaaaactacTCACCTGGAGAAAAAACAAATCGGTTGTACATTAAAAATTTAAGCAAACAGGTTGTAGAAGAagatttaaagtttatatttaaaagatttttaagacATTGTTCAGATCAAGAAAAGGAAAGTCTTGACATCAGACTAATGCAAGAAGGAAGGATGAAAGGCCAATCCTTCGTTACCCTTCCTTCGGAGGAAGTAGCagaaaaagctttaaaaaatgTTCATGGTTATATTTTGTATGAAAAACCCATGATAATTCAATATGGCAGGGCTGGAAAAACGAAGCAGTAATATGTCAATTTTGTTACCATCAATATATACATTGTCATGAATCTTgctcttaattttatttttttaagtattatttgtttaaatattgttttgatttgaatCGTGATGTGTAACAAATGTTACTTAAGCTGGGTTCCCACTGTGGTTTAACTTGGGTTTAAATATAAAACCTAAAAGgttttaaatgtgttttaaaaattaaaataaaacctgAGCATTCCCACTgtgttttaaaagcaaaaacatttaGCGTTTCACTCATGGTAGCCTTTGTGTGATTTATCAAAAATCACTGGATATTGGCGAATAAGTACGCTAAGATTCTCTTGATGTACCAAACTTAGttttttttctgccattttttattCTCTTTTCTGTCTTAACGTGAAAATGCGCAAAATGTGCCCTAAAATCGTTGAAAAATCCTTCGGCATTTGTCGGCGCCTTTGaactttaaaccacaatatcaaaattttttgatctaAGGTTTTATTTTATCTGTGGTTTAAACAGGTTTTATCCCGgaaattttaaaacttgaaCACGTTCACATTATGctttaactttaaaatcttaTTTAAAACATACTTAAAACACACTTAAACCACAGTGGGAACCGAGCTTTAGTATAtactttgtatttttaaaacctGCTAATAAAGCAAAGGAATAATGGGCACTGATAATGAATAATTTTAGTATCATTTTGTTCAGTTGCATCCAagtcttttcttcttcttttttgttcttattaatgCAGTGCTTTTTAAATTCCTGAAAACACACCCCGAAAAAAAGGTTAATTGTGTAAGCAATCAagacttttttgttgttgttcttttaaGGGGGTTGGGCGAGGGTTGCATTAAGATTAAATTATGAAAacatttacataaaaaaattgatataaatTAAATGTTGTGAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4G055	RNA-binding region-containing protein 3 OS=Rattus norvegicus OX=10116 GN=Rnpc3 PE=1 SV=2
Q3MHP0	RNA-binding region-containing protein 3 OS=Bos taurus OX=9913 GN=RNPC3 PE=2 SV=1
Q3UZ01	RNA-binding region-containing protein 3 OS=Mus musculus OX=10090 GN=Rnpc3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004945 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR045164 all species →	Family	RNA-binding region-containing protein RBM41/RNPC3	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16105 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0030626 all species →	Molecular Function	U12 snRNA binding	Interproscan
GO:0097157 all species →	Molecular Function	pre-mRNA intronic binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13157	RNPC3; U11/U12 small nuclear ribonucleoprotein 65 kDa protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.