Gene detail

Detailed information of ENSDJXP00000024782.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_047122431.1, U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDJXT00000028088

CATGACTAATATTCACCACAATATTgatttaacaaaaacaatagaCTGCCCTAAGCTTGTTACTTAAGGCCATAGGCTCATACCACAAACAGGGTGGGTATAAATATGGAGTAGAACACAGTAAAAGCCTCTTGCTCTTGAACAGTTCAGACATTTAGCAACACAAGTAGAAAGTGGTTGCTTTTCAAGGTTGGTCTGAAATGGCTTGATTTACCTAACACTCAATGGCATCTAAAAAAGCAAGAATTAAAGTTGTAATAATTAAAaactgaagaagaagaagactaCAAATTATCGTAATGATTCGTCGAGAAGTGAGATTACGAAAAGAATATCTGTATCGCAAATCTCTCCAAGATCAGCGCAGAGTTATtcaagagaaaaaacaaaagctaaaaTATGCTTTGGATGAAGGCAAACCTATTCCGACAGAACTTCGAAAAGATGAAAATGAACTAAGAAAGTTGATTGCATTTGACGACCAAAAAAATTCATCTGTCTCTGATCACATGGATGATGAATACAGATGGGCGGGTGTAGAAGATCCCAAGATCATGGTAACCACGTCACATAACCCGAGTTCAAGATTAAAACAATTTGCAAAGgaaatgaaattaattttgcCGAACAGTCAAAGATTGAACCGTGGCAACTACATTTTATCGCAACTGGTTTCTGCATGCAAAGCGAACGATGTGACTGATCTAGTTCTTCTGCATGAACACAGAGGAGAACCAGATGGGATGATTATCAGTCACTTGCCATTCGGACCGACGACCTACTTTTCACTGTCAAATACCGTCATGCGACACGACATACCCGATGTCGGAAAAATGTCGGAAGCATTTCCGCATCTTATTTTTCATAACTTTAAATCGAAGCTTGGTGAAAGGgttgaaaacattttaaaatatatatttcctgTTCCAAAAGATGAATCGCGAAGAGTGATCACGTTTGCGAATCAGAACGATTATATCTCATTccgGCACCACACGTATCAAAAGGGAGAGGGAAGAGAAATCTTATTATCGGAAGTTGGACCACGGTTTGAGATGAAACTACACGAAATAAAACTAGGCACAATCGATCAAACGGAAGCTGACACGGAATGGAAACTAAAGCCGTACATGAATACGTCACTGAAACGAAAGCATTTGAGCAACGAGGAAAAAGAGAGCTAGTGTAATTCAACTTTCTACGAAGTACTTGGTACACCTACGGTTGCCGACAGATTTTACGTCTCTGCGATCGCGATGTGTTCAAAAATGTGAGATTATCCTGTCTGTGGATTGATTGAAGACTTGAAGAGGATTGTTAGTACTGTTGTGATGCACAAGCTGcgttatgtattttttataaacgAGCTAATACACGACATCGCCTATTCATTTGGTGACGGTCAATGGACAAATTTAACGTagtatttatttacatttagcTTCACGGTGGTGGGAGAATAGAACCAAGTGAAAGCAACTGATAGAAAAAAACATCACTTAATTGTAAAGCCAGGTTTTGCCTTTGTTTTTCACTAGGAACCGTGGTGTTAGAGTGATAGCGACGTGTTTTTTATGTCGAAAAAAAATCATCCGGTTTCCTCTTACCCAGTTTCTAAATTGTTTTTACGTATCGCTGGCGTAATCTCTTTATAAAGACAGAATGCCCTAGGAATAAGGTTGATGTATCGCAACTCAACAGTCCTGGTAGTCATTTTAGCTACCATAAATTTCGTTCCCAGGGTTGTTGTCAAAGTGCGGAATTTCAGAGACAGCAACCACAAGCGACACGCACTGCGAACTTGTTAAAGTTCACTTATCAATGTTTGCAGCGGATAGCAAacaggttatttggttaggtcCAAAATcttaaaggttttttattttttgtcgaTGTCAGCATGCCCCCATTTCACAATATATCGGACCCCTGCCAAAGTAGTGACATTGCACGAAATTAACTTTTCTAAAGACAATTCTCTTTAATTAGTGGACA

Protein

Uniprot

Uniprot term	Description
Q8VHZ7	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus OX=10090 GN=Imp4 PE=2 SV=1
Q5PQR5	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus OX=10116 GN=Imp4 PE=2 SV=1
Q96G21	U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens OX=9606 GN=IMP4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044281	Family	U3 snoRNP protein/Ribosome production factor 1	Interproscan
IPR007109	Domain	Brix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0030515	Molecular Function	snoRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034457	Cellular Component	Mpp10 complex	Interproscan
GO:0042134	Molecular Function	rRNA primary transcript binding	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14561	IMP4; U3 small nucleolar ribonucleoprotein protein IMP4	-	Ribosome biogenesis	ko03009	deepkoala