Gene detail

Detailed information of ENSDJXP00000025478.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_002154610.2, H/ACA ribonucleoprotein complex subunit DKC1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDJXT00000028879

ATTAGCTTGATGGAATATAATTTCGCGAGAATATAATTTCGCAAGACTTTAATTTCACGAATTGATAGTTTCACTAAATTTCTATTACATAATTTTCACGTATGTTTTTATTCTATacgcttttttttttataggaaGGCTTTTCGTCCTTCACCAATATCGAAGTCGAGATCCCAGGAGAATCGTCATTTTCAGGAGTTGGGGCAATATTTACCACGTGAAGAAGGACGCGCAATGGCGGACATTGAAGTCAAAAaaaaaaagaaaagcaagAAGCAAGatGCTGATGAAGGCTCGGAGGATGAGTTTATGATCAAGCCAACCTCGGTGATACCCAAACTTGACACTTCTAAATGGCCATTACTTCTAAAGAATTATGACAGATTAAATGTTAGAACTGGACACTACACACCCATACCATGTGGTAGTTCACCATTGAAACGATCCTTAAAAGATTTTCTTGCAGCTGGTTTTATTAATCTTGACAAACCAGCAAATCCATCCTCACATGAAGTAGTGGCGTGGATTAAAAAGATCTTGCGTGTTCAAAAAACAGGACATAGTGGAACTCTTGATCCTAAAGTCACTGGTTGCTTGATAGTATGTATTGACAGAGCCACTAGATTGGTTAAATCACAACAGGGTGCAGGCAAAGAATATGTTGGTATACTTAGACTTCACGATGCAATTGAAGGAAGAGATAAACTAGCTCAGGCTTTGGAAACGCTGACAGGTGCTTTGTTTCAAAGACCGCCCTTAATTTCAGCTGTAAAAAGACAGCTTCGTGTAAGGACGATATACGAAAGCAAATTATTAGAATATGATGAAGAAAAACATTTAGGTGTGTTTTGGATGTCGTGTGAGGCGGGTACCTATGTTAGAACACTTTGTGTTCATCTTGGTTTGATTCTTGGAGTTGGTGGTCATATGCAAGAATTACGTCGAGTACGTTCTGGAATTCAGTCAGAAAACGAAGGTTTGGTGACTATGCATGATGTTATTGATGCTCAGTGGGTATATGATAACACAAAAGATGAGTCTTACCTACGAAGAGTTGTCAAACCACTTGAAAGGTTGCTGTTATCTCACAAACGATTGGTTATTAAAGACAGTGCTGTAAATGCTATTTGTTATGGTGCAAAACTTATGTTGCCAGGTATACTCAGGTATGAGTCTGGTATTGAACTTAATGAAGACGTTGTAATGATGACAACAAAGGGAGAAGCCATAGCAGTTGGCAATGCCCTTATGAGCACGGCTACCATAGCTACGTGTGATCATGGGGTAGTCGCCAAGATTAAACGAGTCATCATGGAAAGAGATACATATCCAAGGAAATGGGGTCTTGGCCCAAAGGCCATAGAAAAGAAGAAGTTAATTGCTTGTGGTTTGTTAGACAAGTATGGTAAGCCAAACGAAAGCACACCAAACGATTGGaaaaactacaaaaattacAGTCAAGTAAAAGCAGAGAAATTAGATGAAGAAGCAAAGGCACGcgaagaaaaaaatgcaaacaatAAGAGGAAACACGAAGCTAGTAGTAGTGAAGAAGAGAAGGTGAAagtaaagaaagaaaagaagaaaaagaagaagaaagaacaaGCAGATGAAGGAGAAGTAGAGAATGTTGTGGTAAAGGAAGAACCATCTAGCGGCGATGAGaagaaagataaaaagaagaagaaaaagaagaagaaagctAAAGTAGACGAAAGCGAATAAACATGGATATTACTTGATATAAGCCAAGATATATTTTTAACGTTTTTGTTGAGTGAACAGAAATGTTGAATACGCTAACAATATATAGATGTTTTTATCCTTTACATGTAAATAACTTTCGTATTATACGATGTGTGTTTTTTAGATAATCTGAGGACGTGTTTTTTATCAGAGTATAAATTGTAACATGGTTGGAATTTGTGTTTGTGTGTGATACACATTAAATTTCCTTTATTATCTTTCTGTCACCATAGTTACAGAATGAAGGTCGGGAAAGCGCCAGTAAACTGCTACACCCCGTTTGTAAAGTACGGAACTATTTTCGCTAAATCATGTCCAGCACAGGGATCCCAGCGTAAAATTCTAAAAGTTCAAAGATTAATGAAATgtcataaatttttataaattcagAGACAAAACTGTAGAATCAATCAGTCACGTGATGTTTTTGCTTTTCATAGCTGCGTCATAATTTTCAATATTGTCTCGCTTTGTTTATATTCGACTCCGCTGCGCGTcgtcgaatatcacaagctcgactgaataattacggatatccgattttaccttgctgaatatctgctCATTATTCggtttccttttttaaaatttcgaaatcCATAAATTCATATAAAATATGCCGTTAAATGAATGCTGGGACccctaaaaatacttttttcacaATGTTACCTGGTTGATGCAAAAGAAGCCTGTCGACGCTTCTCCAGAAGAGTTTATTTATAATCATAAAAATATCTCCACTATGCAGGCGTTTTGTGTGATAGTGCGTGCGTGATATATTTTTGAcagttatttttgtttatttggcGTGGTTTTCAAAGCTTAGGACGCATGTTTATTTAACAATACGTCAAAGATATTCAACTGAGTTATGTAACACAAAGAAAATATGAAACTACAATATGTTTTTACGATTCTCTATTGTCTCATTCGTAGATATTACATTCTTCGTTAATTTACATTAGGTATTTAGGAACT

Protein

Uniprot

Uniprot term	Description
F1Q749	H/ACA ribonucleoprotein complex subunit DKC1 OS=Danio rerio OX=7955 GN=dkc1 PE=2 SV=1
Q9ESX5	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4
O60832	H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16198	TruB_C_2	tRNA pseudouridylate synthase B C-terminal domain	Family	Interproscan
PF01509	TruB_N	TruB family pseudouridylate synthase (N terminal domain)	Family	Interproscan
PF01472	PUA	PUA domain	Family	Interproscan
PF08068	DKCLD	DKCLD (NUC011) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032819	Domain	tRNA pseudouridylate synthase B, C-terminal	Interproscan
IPR002501	Domain	Pseudouridine synthase II, N-terminal	Interproscan
IPR002478	Domain	PUA domain	Interproscan
IPR004802	Family	tRNA pseudouridine synthase B family	Interproscan
IPR004521	Domain	Uncharacterised domain CHP00451	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR012960	Domain	Dyskerin-like	Interproscan
IPR036974	Homologous_superfamily	PUA domain superfamily	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000495	Biological Process	box H/ACA sno(s)RNA 3'-end processing	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0031118	Biological Process	rRNA pseudouridine synthesis	Interproscan
GO:0031120	Biological Process	snRNA pseudouridine synthesis	Interproscan
GO:0031429	Cellular Component	box H/ACA snoRNP complex	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11131	DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4	EC:5.4.99.-	DNA replication proteins	ko03032	deepkoala