Gene detail

Detailed information of ENSDJXP00000025700.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_047144389.1, radical S-adenosyl methionine domain-containing protein 1, mitochondrial isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDJXT00000029126

TGGTTTAGTCCCGTTTTgctgtaaattaaaaatcaaatttcatGAAACTAGTACATGCGGAAAATTTAGAATTCTTTTGAAAAACGTAATTCATAGATTCACGAAGCTCTGTACTTGGGAACTTAGAAAGGTTGCTTGACTTATAAAGATGTTTTCATTGGCATGCTAGATAGCCAAGTGTCTTTTAAATGTCTAATGAAAACCAAATCTTCAAATAATTGTTTGTATAATGATTTTTCCACAATATTTTCCAGGGATTTCAAGCATGCAGGGATTAATCGAGTATCCATTGGTGTACAGGCTTTGAATGATGAAGATTTAAAGTTGCTTGGTAGAGAACATTCCGTTGGAGATGCAATCAGTTGCTTACGTCATGCTTCTCATCTGTTTGGAAATCACGTGTCAATTGATTTGATGTTCGGAAGACCTGGTCAGACTCCAACTGAGTGGCAAAAGGAACTGCAACAAGTTACAGACATGAGATTAAACCACGTTTCCTTGTACGAGTTGACCATGAAGAAGTTGACACCTATGGGTAAATCGTTTCGAGCTGGAAAAATCtgTCTTCCTTCAGATGAAGATATGGTTCATATGTACCAAGACACAAAAGAGATTCTTGAAGCAGTGGGTTTGCAACGTTATGAAATTTCAAACTTTGCTAAAAGAGGCTACGAAAGTCAACACAATTTGTCGTACTGGTGTGGCAAGGACTATATTGGGATAGGACCAGgtgcACATGGCAGATTGTCAACATTCGCCGACAACAAATATAAACATCATGCTTTAGTTCAGTTGCCAGTTCCAGAGCATTGGATTAACCAGATTAGGAAAAAAGGACATGGTATAAGAAGATGTCATGTATTAACACAACAAGAAAGaaTTGACGAAGTAATCATGCTTAGTCTACGAACGTGTACTGGAATCCAGTCTAGTGCGTTTCAAGAGCTTGTTGGTTGGTCATATCATCTTCTAAAAGAAGACGAAATTATCCAGCAATCCATACGAAATGATTTGTTAGTAATTGATACTAGATTTTATCACCTGCTCAATAATTCAAGAGAATTGAAGATTTGATGATGAAGTGAATGACTCATGCCGTAGGATGTACAGGCGGCGAGATGAACACGATACTGTCAAAATTAAATCGGATGACAGAAACATCCATCCAACTAAATGAGATTGATTTTACTTTTAAGGATACGAAGGAATGTGTGCTATTCGTGGATAGTTTTAAAAGCACCGTTGATGAGTTGCATGGCAATCACCGCATTCCACATAACTACGGTTTTGATTGCAAATTAGATATTTTTATGtcaatcaatttgaaaaattagtaATTTTTCATGTCAATTTAGTATATacgttttcttttataagagAGTGTAGAATGAAATCAAGAATGAAGCCAGTTGGCAGTAAGGGGAACAAGTTGGAAATTGTGAACTATTAtaaaagtgaagaaattttttttgaaatttctcttgaataaaatggattgtgCAATTGCTTGCATAACCTTGAATTTCATTGCCTGAAAAGCTTGAGAGGAAAAATACGCGCTAAAAAAGTCAAATCATTTTAACCTTTTGAGAGAAGCTTGGGAGTACGTTTTCACGCCGAGTCAGCGGTCATTATatttcattgcgcatgcttgtgaAAAATGCAGTCGTGTGAAAACCAAGCTTAGATTTTCCTGAGATTCGAAAAGTTAAGAATTctcaaattttaagaataaaattaaCCAGGGTCGTCTATCCCACCAAGCAGGATTTTTTATAATACAATAAGCCTGCCCTTTGGTTTTTGTATTATTGGTAATAGGTTTCCGGTTTCACGTTGCTATATTGTACGTCTCTGACATTAACCTTGGAAGAGTTTGAGGCCAAACGACTTATTCCTGGCGTTGTAGAATTTTAAGAAAACGTTAAAGCCAGGAAAAGAAAGTATGATTCTCAAAAAGACTCTTagataattattttcaaaattcagaACAGTCCGCCTTTGGGAAGGAATCCGGGAACTAGATTGCAA

Protein

Uniprot

Uniprot term	Description
A4IGH2	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Danio rerio OX=7955 GN=rsad1 PE=2 SV=1
Q5SUV1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Mus musculus OX=10090 GN=Rsad1 PE=2 SV=1
A5D7B1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial OS=Bos taurus OX=9913 GN=RSAD1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034505	Family	Anaerobic coproporphyrinogen-III oxidase	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13932	COPROPORPHYRINIGEN III OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006779	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan