Genomic Location: JASGCC010000059.1:358972...364220
NR annotation: XP_047125312.1, mannan-binding lectin serine protease 2-like isoform X2 [Hydra vulgaris]
Species Hydractinia echinata · all data for this species · gene families
| CDS |
| ENSDJXT00000030340 |
| Transcript |
| ENSDJXT00000030340 |
| Protein |
| ENSDJXP00000026806.1 |
| UniProt accession | Description |
|---|---|
| P48740 | Mannan-binding lectin serine protease 1 OS=Homo sapiens OX=9606 GN=MASP1 PE=1 SV=3 |
| Q8CHN8 | Mannan-binding lectin serine protease 1 OS=Rattus norvegicus OX=10116 GN=Masp1 PE=1 SV=2 |
| P98064 | Mannan-binding lectin serine protease 1 OS=Mus musculus OX=10090 GN=Masp1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004807 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14670 all species → | FXa_inhibition | Coagulation Factor Xa inhibitory site | Domain | Interproscan |
| PF00084 all species → | Sushi | Sushi repeat (SCR repeat) | Domain | Interproscan |
| PF00431 all species → | CUB | CUB domain | Domain | Interproscan |
| PF00089 all species → | Trypsin | Trypsin | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000859 all species → | Domain | CUB domain | Interproscan |
| IPR043504 all species → | Homologous_superfamily | Peptidase S1, PA clan, chymotrypsin-like fold | Interproscan |
| IPR035914 all species → | Homologous_superfamily | Spermadhesin, CUB domain superfamily | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR000436 all species → | Domain | Sushi/SCR/CCP domain | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR009003 all species → | Homologous_superfamily | Peptidase S1, PA clan | Interproscan |
| IPR035976 all species → | Homologous_superfamily | Sushi/SCR/CCP superfamily | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR001254 all species → | Domain | Serine proteases, trypsin domain | Interproscan |
| IPR024175 all species → | Family | Peptidase S1A, complement C1r/C1S/mannan-binding | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24255 all species → | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0004252 all species → | Molecular Function | serine-type endopeptidase activity | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0006956 all species → | Biological Process | complement activation | Interproscan |
ENSDJXP00000026806.1.Genes whose expression across the transcriptome samples of Hydractinia echinata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hydractinia echinata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
