Gene detail

Detailed information of ENSDJXP00000028990.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_012559877.1, non-POU domain-containing octamer-binding protein isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDJXT00000032845

TCACAAATGTACGTTCTTCAGATTGGGTTTGTGTTTTAGAGGTTTGTTGTTGTGGAAATATAAGCAATAAGAAGGTATGTAGGATGTTCACATGTCCACCTGCGATCAGGACGCTCGGGTGTTTGTGCGCGTCTCCAAGCAAGCAAAATCCGATTTTTTATCGGGTTTAAATAGCGCATGCGTATTGTCTGAGTACCTAGTTTTCAAAAACGTGAACTGAAAGAAAAAGGAACGTCAAGCCAAAAAGGAACAACAGAACAGAACTGGTTACCTAGCCAAACttaatttgataataaaaaatgtttcgtGGTAGAGGTGGAAATCGACGTTCCTTTGATCCGAATTTCCGACCGGGTAGTGGAAGTCCCTATGGTGGATATAAAAAGGACTACAATAATTCACCCAACAGAAAAACAGAATGGGTTTCGTACAAAAAACAATCTTCGAGTGCTGATAAAGCAAATGTTAGCGAAGAAAAAATGAGTTTTGAAGTACCATTTGTACAAAAGCTTGATACTGGTGTCAAGTCAGAAGAAACACAGTCTTTACAAACTCCAAAAGTTGAAGCCAATGCAGTAGTTGTTAGTCCACAAAAGAAGGTGGAGAAAGACAAATCTCGGTCACCTATTGTTGAGAAAAAAGATCAGAGTAATAAATTCAGAGATAGAGATAATTTATCAGATACACAGAAAGTTATTGAGTCACCTAAGCAAAAAAATGACTTCAAAAGTTCAAAATCATTAATTAAACaaggtgaaaaaaaattcagtggCAGATGTCGCTTGTTTGTAGCCAATATGAACAATGGCACAACAGAAGAGGACTTAAGGGAACTCTTTGGTGAATATGGCGAGATAGGAGAAGTCTATGTAAATAAAGAAAAGGGTTTTGGATTTATCAGATTGGATTATCGACATAATGCTGAGATGGCGAAAAGTTGTCTTGATAAGAAACTTTTTAAGGGTCGAAACATACAAGTTCGTTATGCTACACATGCTTCAGCAGTCGAAGTTCATGGTTTAGATCAGTATGCTTCGAATGAGTACATAGAGCAAGCCATGAGTCAATTTGGCACTGTAGAAAGAGCTGTTGTAGTTTGTGATGATAGGGGACGGTCAAAGGGATATGCAATAGTTGAATTTGAATGGAAGAAATCTGCTCAAAAAGTGCTTGACAGATTTAAAGAAGAAATGTTTGTATTAGGAAGGTTGCCAAAGCCTATCTTTGTGAAACCGAGAAGTCAATTAGATGAAGAAGAAGGTCTGCACGATTCAACTATTGAAAGAATGCCTGGCTTTCAATCGGAACGGGAATTTCAACCAAGATTCATTTCACCAAGTTCATTTGAATATACATGGGCAAAAAGATGGAGAGATTTGTTTATAGAAGAAGAAGATAAAAAAGCAAGATTGGAACAAGAATTGCAGGAGTCTCGTTACAGACTTGAATTAGAAATGGAGTCAGCTCAGAAAGAACAAGAAGCGGTAAAGATAAGAGAAGAGCTTATCAGACGACAAGAAGAACTTCGAATGTTGGAGGAGGATATGCGAAGGCGCCAAGAAGCAAATCTACGTACTAGGGAAGAACTTGATAGAAATAGAGCTAAGAGGTTTGAAGCACACAGACATCCCAATCATATTTCGAATAGgcAAGAAACACAGGGAGGTGGGAATTACATTGTTAATGACAACGCAGCCCAGCATGAATTTATGATGAACCAACAAGCTGAACTTGAAGCTCGCAGGGGAGACATGCTAATGgCTGCTGGAGGAGTTCAAACATCCGTGCTTGGCATAAGGCCTGATATGATTCGTCCACCTGGCGTTCACATTGCTGGTTTGCAATTGCCACCCCACATGGTAGCTAATATTCCTCCAGGTATGTTACCTGGACAAAGAGGGCCCCCTCCTGGAGTGAACATGGGATTCATGcCAGGTAGACCACCACCAAGACACTTTGCTCCACGGGGAGGTCATGGTGATCATCACTTTGATCATAAGAGACCTCGAAGAAATTAACAGTTTAAAGATGGCAATTTGATGATATAATATGCAACCttattttgacatttaaacttTATGGTGCAGAAATTGTATACAATGTTGGATTTAGAATTTGTGGTGTTAGTTGCATCTGAAAGAAGTAGTTTAACAGTCCTTAGCACTGTAGAGAAATAACAAGGAACTTTAAAGGTTTCAGTAGCTTACtgattttatgtatatttttaaaaggaGTCTCTCCAAGATGTATTATTGGAATGTCATGCTGTGTGTTTTTCTTTATACTTGTTTATAAGAAATTGACATTAAAAGCAAACCATAAATAAGAAATGATAGCTAGTATGAACAAATTTAAGTTACATTTGGTACAAAGCATGTTagatattttttgctattttatgCACAACAGCTGCATTCTTATGTCCAATGGCTGCTAACCTAACAGGTGGTTAGCGTAATACTAGGATTAGAAAATGAGCTTGGCTATTGCCTAAGTGTTACCAAACATAATGTTAGATGggcaaaaaaaatcaacatagTTAAGCATTTGGAAAAGCTGTTATACATTCGTAAATATATTGCCCGCAgttgcaatatattttttcactaCAGATTGTAGGTTGACTGGATTTTTTcggtttgtttttttaaactaattttGGATAGTGTGTTGTGACTGTATTACTATTTCTGTATTGCCTTTTTTTTCATATACCAGGAATTTTTGGTTgctataacaaaataaatctttaaaaataaacgcTTTTATCTTCCTTGCTTCTTGGAGATTGTCTTTGTTTTTGtgtcttattttgtttttaaaaaagtgtccaaacaaaaaaaaactatttatgaTTATTTGTCTACAAGATATTccatttacatgttttttatcaaaaaaatgcattttttattgaCCCCATTTTTGTCAGATTTCGTTTTTCGAAATTTGTTGAAAACAGTTCGTTCATGTAGAAAAACGTTCGAAAAACgttcaaaatataaacaacaaaggCA

Protein

Uniprot

Uniprot term	Description
Q15233	Non-POU domain-containing octamer-binding protein OS=Homo sapiens OX=9606 GN=NONO PE=1 SV=4
Q5RFL9	Non-POU domain-containing octamer-binding protein OS=Pongo abelii OX=9601 GN=NONO PE=2 SV=3
Q99K48	Non-POU domain-containing octamer-binding protein OS=Mus musculus OX=10090 GN=Nono PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08075	NOPS	NOPS (NUC059) domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012975	Domain	NOPS	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13219	SFPQ, PSF; splicing factor, proline- and glutamine-rich	-	Spliceosome	ko03041	deepkoala