Gene detail

Detailed information of ENSDJXP00000035448.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_004208086.2, E3 ubiquitin-protein ligase RNF220 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDJXT00000040274

AACAGGTTATTGAATCATTCTACATTATGCAATCATTTACAAAAAAGTAGTAACTGATCCAACTGGTGTGAGcatcaaaatttacaaaatatgtaAACAGAACTTTATCATTGCAAAAGCATAGTGCaaagattattaaaaaaaatagttatatttataaaaacaccAGAAATAAAatgcttgaaatatatatatccaAGTCAATAACATTATTTGGCTCTTTAGAtcacaaaaaataacttatttctCAAATCATCGTGGAGTTCCAGTATATACTTAAAAACTTACACTATTGTTACATGGCTTCTGAAAGAGCCAAAAAAAGAAAGTCAAGTTGCCGAGTAGGAAGGTGCAATTTGAGAGACCATAGTCAAAGAAAAAACACTATTATGCACATTACTTGTCCTGTATGTACTATTTCTGTTAGAGGAGATAACGCATTAAAATCACATTATTTAATGGAAATGAAACGTATGCAAAAACCATTCGAAAACATGGAGTCAAAAAGAAAGTTTTACAGAATGAAATTACGAAGTTCTAATGCTGAACAAGAAGAAGAATCTTCTCACTCGAATGAAATTACAGACCTTGAAACCCGTGTTACAGATTTAAAGGATATCAAAAAACGAAAATTCAATAGATATGCCAATATGTTTCTCCTTTCAaagcaaaataaacataataaacCACATGAGACATCTTCAAGTTCTTCTCAAACGGACGAATCAGCTCAGTATAATTTGATTTCGTGCTCAGTTTGTAATGAATTCCTAGAATTGTCTAATGAAAAGACAACTAAACATTTAGCTAAATGTTTTGCAAAGAGAGATTATGAGTATAATTTGTACAGCAGCAGTGATGAAGAGGAGGAAGGAACAGTGGAGGAGTTTTCTTGGGCTGGTCAAACTTGGATACGTACGTCATCTCTTGTGGATTCGGATCTTTTGCGTCGAGAGGGACGGTTGATGCGCATGGAAATGGAAGATGGAGACGAGGAGTTAGATGTTGATGGTGGTGATTGGTTTGGTGAACAGCAGTTCGCTGAAACTGACGTAATACCGTGCACATCAAATTCTGCCGGCAAAAAACCACGTGACTTGCATGCAGCTGTTACGGAGGGACCCAGTGGTTGTAGTCAATATTCCAAATCAAGTAGCCATTGGAACGACACGCTGCAACAGGCTAGTGAAGAAAGCATCAAAATGCTGGAAGAAAAAAGCGCAGGGGATAAAGACAAATTTATCGATTCACTTAAGCATAAAATCATCCAGATAGAAGAGCGACTTGATATTGAGGTTTCAAAGTGTTCAATCTGCATGAATCCATATACTGATCCTGTCGTTTCGACCGGTTGCTGGCATGTTTGTTGTAGAGAATGCTGGATGCGAACTCTCggtgcaaaaaaattatgtccaaaGTGTAATAATATTGTAGCTCCTTCTCaattaagaaaagtttatttataattttgaaaccTGATGTTGGATTTTTAATTATTGTCAAACTAGACAgcagaacaatggaaaagaaccgtcattttaattttttgttagaAATCTGTTCacccgttgcctctattgtgtagatcttgaaacgctgatggagaaaatgtacaggatcatgTGCTTTGACGAACTGTtaaagagatattggggttatAGGGTTTTCGAAACGAAACAGGTGGGTTGACCTAGCCTTAGGAAATTAGTCCTATTTTGGTCCCTAGTTATCTATGCGGTGAAAAATAACAGTCGTCATCATACCCAGCCAATTTTTTCTACCGTATTTCAAggttatgaaaacaaaaattttcataattaACAGCGATTTGGCAtattaaaagtttgaaaaacattgttatttcatttttgaaatGGAATTCAAAATACTGTTCTTTTTTACCCTCACCGATTATACTAGAAAGAATCAAAAATccattttcaattatttttttttgatatatatgGCCGTTAGATAAACGTTACAggttaaaatttctttaaatgaGTGATGATATGTAacagttacagtcggaggggaggaagagccgttaggatggaatccccaaggacgttaaaattcccctttacttatttacttattaaatatatacaaaaattgcCGGAGCAAAAAGAAGGCACAAATTGCCTTTATGTGTCTCTTATATTAATAGTCTGTCCCCTTGTACGGCGCAATGTGGAGCACTTTTTCCCTTGAAAATAAGCGATCAACTATATCTCAATTGCTAACCGACATAGTACTTATTTTGACGTTACGGGACAACGTTGATAAATTAGATTGACGTCATTGCACATTTAacttgaggccaaataacttgaaaatgcgctggtgacgtcagttatttttcactACGCTGGTAACTAGGAAACACCAGGAACCAAACTGGATAAGTTCTtaaaatccgtttcggaatggacttGTTAAAGAGTTATCAGAAGAACCTT

Protein

Uniprot

Uniprot term	Description
Q8HXD5	E3 ubiquitin-protein ligase RNF220 OS=Macaca fascicularis OX=9541 GN=RNF220 PE=2 SV=1
Q5VTB9	E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens OX=9606 GN=RNF220 PE=1 SV=1
Q6PDX6	E3 ubiquitin-protein ligase Rnf220 OS=Mus musculus OX=10090 GN=Rnf220 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF15926	RNF220	E3 ubiquitin-protein ligase RNF220	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR052443	Family	E3 ubiquitin-protein ligase RNF220-like	Interproscan
IPR031824	Domain	E3 ubiquitin-protein ligase RNF220, middle domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13459	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25174	RNF220; E3 ubiquitin-protein ligase RNF220	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala