Gene detail

Detailed information of ENSDJXP00000040652.1 in Hydractinia echinata

Genomic Location: not available for this species
NR annotation: XP_012555972.2, SWI/SNF complex subunit SMARCC2 [Hydra vulgaris]
Species Hydractinia echinata · all data for this species · gene families

Sequence

CDS

ENSDJXT00000046372

atggctgcGACAAAAAAGGACGGTGGCGCTAACTCAAAATATTGGGATTCACCAGAAACTATTGAATCCCTCGAGCCAGTTCGACAATGGttacttaaaaattcaaagAAATTTGTTCAAGCTGAATCTCCAAGCACAAAGAGTTTGGCAGAATTGGTAAAACAAATGATACAATTTCAGGAGATGAAAATTTTAACTGATAACACATCTGGTGGTGGATTGTGTCATGTTTTAGCTAGCGCATTCAAATATAAAGTGGACCAAGGATGGAGACGTTTTGATTTCCAATCTCCATCTCGCATGGATAGAAATGTAGAGTTATTTCTCAATATAGAAAGGTCACTAAAGGAGaaaaattTGCTGAAACCACCAAAAATCTGTTTTGAACCTACAATGGACACAAAACATTTACTCAGATTAAGAGATATTGTTAAAAGACATCAGGTTAGTCCGAAAACTGaatatttCGATGTGCAGTTTGATAAATATTGTATTATAGAGGAGTGGATTCGTCCCATAATGAAGCGAGACAAAACTGTATTGGTGCATTGGTGGTACTATCCAGACAGTTACGATTCTTGGATTCCTCTGAGTGAATGTGATCAAGAACCTGAACCAGCTCCTCAAAGAACCAAGCCATGGGAGGTTAATGGTCGTTGGCTTCTGGATATGGACTTATATAATGAGTGGATGAATGAAGAAGATTACGAAGTTGAAGAtgtattttactttttgttatttttattCAGTAGAAAGCGTAAGTTGATGACATCACCCGAACCAAAtggtaaaaagaaaaagaaaggaaggaGTAAAGAGGAAATGGAAGGAGACAACGACTCGACACTTGAACTACCTGATCCTGAACCCGTTCCAAATGTGAGTTACGTTGAATGTAACCAATTTATGTATCTAATTGGTgaaaacaaagaaaagctGAAGAAGGAAAAGAACAACGACAAACCAGTAGCGAAGATTTCCGAAGAAGTACATCGCGATCCAGAAATGCCCCATGATGATAACCTTCCGGAACAAACTCGACACATCGTTATTCCAAGTTACGCAGCTTGGTTTGATTACAACAGTATTCATGCTATTGAACGAAGAGCTTTGCCGGAATTTTTCAATGGCAAGAATAAATCCAAGACTCCAGAAATATATATGGCGTTCAGAAACTTTATGATAGACTCTTACCGTCTAAATCCAACTGAATACTTGACCGCAACTGCCTGCAGAAGAAATTTAGCTGGCGATGTTTGTTCTATTATTCGtgtCCATGCTTTTTTGGAGCAATGGGGTTTAGTAAACTATCAGGTAGACACTGATAGCCGCCCGCTACCCATGGGTCCACCTCCCACGTCACATTTTCATGCACTGGGTGATACGCCATCTGGATTGCAGCCTCTACTGCCACCAAAATCTAAtATTTCTGCGTCACAGCAATTAATTAATCTAGCTGATAAGGATAAAAAACCCGATAAAGATGACGTCACAGATCTTAGCAATTTTGGTTTACGTAACGATGTGTACCTAACAAAGAAGGCACAGAAGAGTCGATCAGCTGCTTATAAAGAATGGACTGACCAAGAAACGTTACTTTTGTTAGAAGGACTGGAACTCCATAAAGATGATTGGAACAAAGTATCGGAACATGTTGGGACAAGAACGCAGGACGAATGCATCATGCATTTCTTAAAATTGCCAATTGAAGATCCTTATTTAGAAAATGACACATCTGGTTTCCTTGGTCCTCTGGCCTACCAACCAATGCCGTTCAGTCAGTCTGGTAATCCAGTGATGTCTACCGTAGCATTTCTTTCTTCTATCGTTGATCCCCGTGTGGCTAGTGCAGCTGCAAAGGCAGCCATAGATgagtttacaaaactaaaagAAGAGATTCCTGAAGATCTGATACATGCACACGTGGAAAGAGCGCAAGCAGAGCTGAAGGCTgaacaacaaaagaaagaaaccgAAGATGGTGAGGAAAAACAAAAGAGCGAGGAAGCGCAAAGTGAGGAGGAGAAATCAGCAGTATCTCCTGCGAAGGAGTTGACTGAAGAAGAGAAAGAGAAAGTGAAAGCCCATCAAAAACTTACAGATGGAAATATCAAAACAGCTGCTTCTGCTGCTATTGCAGCTGCTGCAGTGAAAGCTAAGCACCTAGCGCAAGTGGAAGAACGAAAAATCAAAAGTTTAGTGGCTTTACTTGTTGAAACACAGATGAAGAAACTGGAAATCAAACTGCGTCATTTTGAGGAGTTGGAAACAATCATGGATAAAGAAAGAGACATGTTGGAACAACAGCGACAAGCGCTTATAAAAGAACGACAAGAATTTTACATGGATCAGATAAAAGCACAAGAAGCAAGAGCAACCAAGACAGGAGATGTACTTGATATGCAACCGCACCCACCGTCAGCCACGCCTACTGTCCCAGCGGTTACTCTGTCTGCCGATTCGGAAAAATATTTCTTTCCCAAAACTTCCACCACCGACACTAAAATACCAGGACCAGATTTCTTGCAGCACCAAATGACTACAGCTCGATCAGGTGGACCATCGCTATCTGTACTGTCTCCGATGGAACCAAAGCGTGATCTGACATCTTCAAGCTCCCCCGCTGTCACTGCTGCTGAGTTACTAACTGCAAAGGCTCCTGTCCCCCTTAACAACGCACAGGAGGAGAAGAAAATACCTGAGTTACCACCATACGCTGCACAGCCTCCACCTATGCCAACGAGCACCGGACGTGGTCGCAATAGGGGAGGAAGGGGTAGAGGTGATGCAATGCATCAAGCCTACATGGCTAACATGCCACCCTACAGTGGTTACGCTGGCTTTCCAGGTCAGCAAATGGCTGGTATGGCACCAGGAATGCAAGGCTTTCAACCCAATCCTATGATGCAAGCTGGTGCTGGAATGATGCCGAATATGAATCCGGCACAATTCCCTGCAGGACAGTTTCCTCCTGGAAGTCAGTTTCCACCAATGTAG

Transcript

ENSDJXT00000046372

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TAQ2	SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1
P97496	SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX=10090 GN=Smarcc1 PE=1 SV=2
Q6PDG5	SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004403 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16495 all species →	SWIRM-assoc_1	SWIRM-associated region 1	Family	Interproscan
PF16498 all species →	SWIRM-assoc_3	SWIRM-associated domain at the C-terminal	Family	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan
PF16496 all species →	SWIRM-assoc_2	SWIRM-associated domain at the N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR049898 all species →	Domain	MarR-like, BRCT and chromo domains module	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR032451 all species →	Domain	SMARCC, C-terminal	Interproscan
IPR032448 all species →	Domain	SMARCC, SWIRM-associated domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR032450 all species →	Domain	SMARCC, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12802 all species →	SWI/SNF COMPLEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016514 all species →	Cellular Component	SWI/SNF complex	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDJXP00000040652.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.