Gene detail

Detailed information of ENSDJXP00000044912.1 in Hydractinia echinata

Genomic Location: not available for this species
NR annotation: XP_012556234.1, cyclin-F [Hydra vulgaris]
Species abbreviation HECHI · all data for this species · gene families

Sequence

CDS

ENSDJXT00000051348

ATGTGGCCAACAGCAAATTTGGATTGTGAAATTTTTGAAAGGGGTGCAGACGCCCGAAATCAAGAATGTTTAGTCAAGCTTGGGCTGGCACATTTGTACCATTACAATTTAACTGccTCTGCAGAGAAGACTGTAAAGGAAGTCAAATATCATGCCACTCTATCTGCAAACTATTTATGCAGCCTGGATAACAAGATTGTCCCCAAAAAACCAATCACATGGATGCTACTCCGTCCACCCTGGTCAACTGCTAAATCGATTTGTTTAAAGCAGGCTGTGCATAATCAAATGTTAAAGTTTAAGGGATCAAATGCTGATAAAGTAGTTTGCTACAACCTGGGTAAAGTTCTCAATTTAGATAATGAAAATGAATCAAATGATATAAAGGCAAAAGAAAATCTTTCAGCTGCTTCACTAATGGGTTTTACTCATGCTAAATTTGAGATATTATTGCAAGAGGAAAAATCTGTTTTTGCTAAAACAGATGTTGGTGCTCAACTTCGATGGTTTCGTGATTTGCAGGCATGTGCTGCTAATGGCAATACTGATGCTAGGTTTAAACTTTGTCAATTAATTGCATCTCATTATAGTGAAAAGTTTTTATGCCGCTTTGAAGCAATTAAATTTTCAAAGGCATTATTTCGAAACAGTGACTGCTCACACATAGAGAAGTTAGAGAATTATCAGCCGAAGATCAATAGTCTCATGAGGTGCATTCTAGTTGATTGGATTGCAGAAGTAGCCTATATGAAAGACATGTCACACCAAGTCCTTCATGCTGCTGTTCATTACATTGACTCTTTCCTGATGACTAGAGTTGTGGAGAGGACAAAACTTCAGTTGTTAGGAATCACATGCTTACTTTTAGCTGCCAAgTCCCACTATGATCCTCGTCAGGTGCATATCTTAACAGTTCGTGAGTCTTCTTGGTTGACAGATCAAACATATCAGTATGAGGATGTTGTAAGAATGATGGGAGAAGTAATGGGAACATTGAAATCTGATCTCTGGCGTTCAACCTCTTCTGATTATTTAGAGCTGCTTCTTTCATCACCCTTAATTCGCGACATTGAAAAAGATTTAGTTCATTATTTGCATGATTTGTCTCTACAGTACACTGTTGCTGGAACgtATAAAAGATCAGTAATTGCAGCCTCAGTGTTATTTTTGGCAAGATTGATCCTAAATATTGAAACACCTTGGCCATCAGAGTTGTCAGATTTTAGTGGTTTCCTAATCAGAGATATTGCTAATTGCACAGCAATACTTTACTACAAATGCTTTATTTGTCCTTCGGTAAAAGACGATAGAGATTTACCATTAAGGAGCATCAAGGAAGAATACTTATCTCCTAAGCACTCGAACATTGCAAATTTAACTTTTCCACAACAACTTCAGCTGAAAAGCCGCATCTTGGCTGCTGACTGTACATTGTCATGTGTGTCCGAAGATCCTTTACAGTTTGTTGTTATGTCTCTTGATATTGATGAAACGTTTAACGCTAGCGTTAGAAGCATCGATTACGATGGTGATTATGAAGATTTTCTTGATCATGTTAGTGATTCAAGCTGCGACGAGGAAAGTTTCTGCGTAGGGAGAACTCGACTATCATCGTTTAGATCAGTGGACGAGTTCTCTGATGATGAGACAACTATGGATGCAGAAAGTTTAAATTATGGATCCTCAAGACTGAATCAGTCGAAGGAAAGTTTCACGCCTATATACCAAAGTAAGAACGTAAAAGCAGTGATGATTGAGAAGAGTGAAATGGTTGAGTTCAAATATATCAATCCGCTGAATGAGAAAAGTGTTTTCTTGTTTCCTGAAGAGTCTTGTCATTCACAACTTCAAGACGAGACGAATGCAGTATTGCCTGACACACACAGAAGTGGTCTAAATTTTCCTATTAAACGTAAACATTCCTCGTTGCATTCCGACATTTGTAGTAAGCAACATAGGAACAATGTTGTTGGCAAAAGAACTAGATCAACtttagtaaattttaaatag

Transcript

ENSDJXT00000051348

AGCACCATGCAAAATTGTATCGCTCGGGACGGGACGTTTTAGCcaattaatttgaaaattgcTGCTAATAAGCCAATCAGGATCAATGTACAACGGCTCCGGGTTTTCAACTATAAAAAAGCAAAGTGAGCAACAATAGTTGAAGGGAAAAGTGGATTAAGAAGTGGTTGAGATTTTTGCTTTGTTAGGgaaagaaaatattgttttttcccCTGAAAACATGACGGATAgtGTGCAGGAAGCTATCCCATCTTATTAGTAATAATGTGTCCTTGTGGGCTCATGTCAGTTATCAAAATATGTGGCCAACAGCAAATTTGGATTGTGAAATTTTTGAAAGGGGTGCAGACGCCCGAAATCAAGAATGTTTAGTCAAGCTTGGGCTGGCACATTTGTACCATTACAATTTAACTGccTCTGCAGAGAAGACTGTAAAGGAAGTCAAATATCATGCCACTCTATCTGCAAACTATTTATGCAGCCTGGATAACAAGATTGTCCCCAAAAAACCAATCACATGGATGCTACTCCGTCCACCCTGGTCAACTGCTAAATCGATTTGTTTAAAGCAGGCTGTGCATAATCAAATGTTAAAGTTTAAGGGATCAAATGCTGATAAAGTAGTTTGCTACAACCTGGGTAAAGTTCTCAATTTAGATAATGAAAATGAATCAAATGATATAAAGGCAAAAGAAAATCTTTCAGCTGCTTCACTAATGGGTTTTACTCATGCTAAATTTGAGATATTATTGCAAGAGGAAAAATCTGTTTTTGCTAAAACAGATGTTGGTGCTCAACTTCGATGGTTTCGTGATTTGCAGGCATGTGCTGCTAATGGCAATACTGATGCTAGGTTTAAACTTTGTCAATTAATTGCATCTCATTATAGTGAAAAGTTTTTATGCCGCTTTGAAGCAATTAAATTTTCAAAGGCATTATTTCGAAACAGTGACTGCTCACACATAGAGAAGTTAGAGAATTATCAGCCGAAGATCAATAGTCTCATGAGGTGCATTCTAGTTGATTGGATTGCAGAAGTAGCCTATATGAAAGACATGTCACACCAAGTCCTTCATGCTGCTGTTCATTACATTGACTCTTTCCTGATGACTAGAGTTGTGGAGAGGACAAAACTTCAGTTGTTAGGAATCACATGCTTACTTTTAGCTGCCAAgTCCCACTATGATCCTCGTCAGGTGCATATCTTAACAGTTCGTGAGTCTTCTTGGTTGACAGATCAAACATATCAGTATGAGGATGTTGTAAGAATGATGGGAGAAGTAATGGGAACATTGAAATCTGATCTCTGGCGTTCAACCTCTTCTGATTATTTAGAGCTGCTTCTTTCATCACCCTTAATTCGCGACATTGAAAAAGATTTAGTTCATTATTTGCATGATTTGTCTCTACAGTACACTGTTGCTGGAACgtATAAAAGATCAGTAATTGCAGCCTCAGTGTTATTTTTGGCAAGATTGATCCTAAATATTGAAACACCTTGGCCATCAGAGTTGTCAGATTTTAGTGGTTTCCTAATCAGAGATATTGCTAATTGCACAGCAATACTTTACTACAAATGCTTTATTTGTCCTTCGGTAAAAGACGATAGAGATTTACCATTAAGGAGCATCAAGGAAGAATACTTATCTCCTAAGCACTCGAACATTGCAAATTTAACTTTTCCACAACAACTTCAGCTGAAAAGCCGCATCTTGGCTGCTGACTGTACATTGTCATGTGTGTCCGAAGATCCTTTACAGTTTGTTGTTATGTCTCTTGATATTGATGAAACGTTTAACGCTAGCGTTAGAAGCATCGATTACGATGGTGATTATGAAGATTTTCTTGATCATGTTAGTGATTCAAGCTGCGACGAGGAAAGTTTCTGCGTAGGGAGAACTCGACTATCATCGTTTAGATCAGTGGACGAGTTCTCTGATGATGAGACAACTATGGATGCAGAAAGTTTAAATTATGGATCCTCAAGACTGAATCAGTCGAAGGAAAGTTTCACGCCTATATACCAAAGTAAGAACGTAAAAGCAGTGATGATTGAGAAGAGTGAAATGGTTGAGTTCAAATATATCAATCCGCTGAATGAGAAAAGTGTTTTCTTGTTTCCTGAAGAGTCTTGTCATTCACAACTTCAAGACGAGACGAATGCAGTATTGCCTGACACACACAGAAGTGGTCTAAATTTTCCTATTAAACGTAAACATTCCTCGTTGCATTCCGACATTTGTAGTAAGCAACATAGGAACAATGTTGTTGGCAAAAGAACTAGATCAACtttagtaaattttaaatagtgttagttttttgaaaccgtttcattttttatttgcctTATAGGCGGAGTTTTATCGAAACCTTTTATTTCCTGGTAGAAAGTAATAGTTATCGTATGGTACAGAGTACAATATGACATATAACGGCtcggaaaataaaaacaaaaatatcagaAGGAGAAAACGCTTAGGGAGATAACCAGTTTATCATTATTGCGAAAAATCTTAGCATGATTTTAAAATCGAAGGACGTGTTCTTTTTCCTAAAAAGTTTGTTGTAAATTTTAATCGAATTACCTGTGGTATAAAACCCGTCACAATAAATTCAAACAGTTAACAACCTACAAATTTGTAAAAAGATAAGGACGCaaacaaaagttaatttttaataagtCGTAGAAAATTGTGGATAATAAAACCGCATTTGCATATCACTACGAGACggaattaacaaaaataattgttttcatATACGACAGCTtggtttttaaaagtttgttttgataacATTCGAAGTTATTTTCGAAATTTGAATACTGTCTGTTaaacatttgttgttgtttctgaaaaTATGAGATATTGTATTTACCTCTCTACTCTTAGTCAATCACGTATGAGATGTTTTTCGTGCTAATGATGGATGTGTATATTTATACCATGTAAGAGCATAAGTACTGTTATTAAACATTTATTTGTtctgtacaatatatatataatatataaatatcatgtaacatttatatatttataacttACTGAAACATATTTCAGGTATTGTTTTAAGTTCCagacaattttttaacaatgCATTTTATCAGTTCCTCTTCTcgcttttttatgattttttagtCATTTTAGTGCATATTGGCTTCACTAACGTCTATTTTGTGCATCCGGcataaagattttttaatttttttaatgacaCGATAACGCATGCAAAAGAACATTACACACAAATATTTTAGCTAGATAGCTTTGGTTAagggaataaattttcgcgcaTTAAATTTACGCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XGG5	Cyclin-F OS=Xenopus tropicalis OX=8364 GN=ccnf PE=2 SV=1
A5PK16	Cyclin-F OS=Bos taurus OX=9913 GN=CCNF PE=2 SV=1
Q7T0L6	Cyclin-F OS=Xenopus laevis OX=8355 GN=ccnf PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02984 all species →	Cyclin_C	Cyclin, C-terminal domain	Domain	Interproscan
PF00134 all species →	Cyclin_N	Cyclin, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR039361 all species →	Family	Cyclin	Interproscan
IPR004367 all species →	Domain	Cyclin, C-terminal domain	Interproscan
IPR006671 all species →	Domain	Cyclin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10177 all species →	CYCLINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000079 all species →	Biological Process	regulation of cyclin-dependent protein serine/threonine kinase activity	Interproscan
GO:0000307 all species →	Cellular Component	cyclin-dependent protein kinase holoenzyme complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0016538 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase regulator activity	Interproscan
GO:0044772 all species →	Biological Process	mitotic cell cycle phase transition	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10289	CCNF, FBXO1; F-box protein 1 (cyclin F)	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.