Gene detail

Detailed information of ENSDJXP00000046405.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_032888086.1, eukaryotic translation initiation factor 4 gamma 1 isoform X3 [Amblyraja radiata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDJXT00000053128

gcaaatcaaaattaaaataaatatggcTAAAGAAATTGGGGGATATGATGTTATTTTTGTGGAAGATCTGAATAAAGATCATGAATGCATTGTGTGTCACTTAGCTCTACGCGAGCCAGTTCAACTATCATGTGGTCACAGATTTTGTAATTCTTGTTTTGAGCAAATGAAACTATATTCTGTAAACAGaaatgattTACATTGTCCATTGGATGCAAGGAAAGTTGATATTAATAAGgtattCAGGGATATAGGAATTGAAAGAACGATTTTGAATCTTCTTATCAAATGTAAGAACTGTGAAAAAGGTTGTGAATGGGTACAAGAACTTAATAACTTGGAGaatCATCTGAAAAACGATTGTCAAAAGGAGTTGATCAAATGTAGCATTGAGAACTGTGACAAGTATGAAGAAAGAGATAAAATTCAACAACATGAAAGTGCCTGTCCAAAAATCcTGCAGAACATGATCAAATCAATGCAAAATTTGGAAAAGACTGTTCAACAAttgaatgaaaaaattactggATATGAATTGTTGTTGAGAGAAAAGGATGAAATAATATTAGGAAATAGCAAGAGGTTAGCTGATCTTGAAAAACAAGTTGCCAGTGTAAGAAGCTTGGAAGAAAAAGTCagaataattgaagaaattaaaaagaaagaagaaatgcCAGATACAAAgGGGGCAACGTTTCGAAAGGTATTACTTAATAAATGTCAGATTGGATTTGAGGATGTAATGGATAAAAGTTCACTAAGTGATGGAACTTCAAACAATGCTTCAAAGATTGATAATATAAAATCAGATGTCAACCAAAAGAAGAGAATGTTGTTACACCTTATGAGGTTTATTGGAGAGCTCTTTAAGTTACAGATGATTGCTGAAAATATTATGCACAATTGTATTCTTGAATTGCTCCGAAAAAATCAACTGGAATACTTATGTGAATTTATTACCACTATTGGAAAAGATCTGGATCATGAAATTGCTaagcccATAATGGACCAATACTTTAATGATTTAAGCAAAATCACCAGAGAAAAGAAGATATCCTTTAGAGTCAAATTCCTTATTGAAGATCTCGTGCAACTCAGACAAAACAAGTGGATTAAATGTTGCGAAGATGAGGTTCCAAAAACAATTGTAGAAATACGAAGAGAGGCGCAACGTCAAAACGTCTGCTTCGGAGGACAGCTAGGAAAAAGCGCTAGTTATCCATAATTTTTTACCATTGCAATGCAGGGGAGATTGTGGTTAAAATCGAAGTCTGTACTATGTTTTGTAGATTTAGGATTCGTACTGTGTAAAGTGTACATTGGATTTCATGTTTAACCTACCTTAGCTTGCTTAAGATTTACATTAATATATATGTTGCATTGCCTTGTGGTATTggctttaaatgtttttataattcttgTATATAACTTATTTGATTGACAGATGTAAATCCTTTTTGTATTGTTTAATAACCAGTAAATTTCCATAGGGAACtggaaaatatgttaatttAATAAAGCTGAATTAAACTTAATTATATAGTCAGAAAATTATGACTAggccttttttgtgtgactacCAGTTCGTGTATGTTAGATAAGAATACTATTTTGTTATagtgtgtttttattgttttgtttttgtattgtttATGGACGACTAGACTTTAATGTCAGGCAGTAATACCATTTATTACCCCACTGTTGGgtattttcgaatgtttacgtttattcgaacgttctcggaaaatttgattggttttttTTTCACGTGACCAGTCTATATGACGCCGTATTAAccgacatcaaaacaaaaacaaaacaagaaagttaATTTAAAGTGGTAGAAAAATGTCAATTACTCCTTGTTTTCGTCTGGTAGACGATAGTTTATTCGACGATTTAAATGAAATAGACGAAttcatagcaggacaacatCGATTGGAAAGCTTTTGGATGCAAATGTCCCCGAAGTTTATGTAGGCCAACACAGtggtcacaaaaatattgattcgtTAAGAAATTACAAATCAGCTAGTACCACTCACCgttacaaaatgtcaaacatCTTGAGCTCAAATAATAACCAACTTGACGTACATAACCAATCGACAGCTCTTAATACTTCCAGTTCCACGCAGTCTTCAATTCTCTCTTCATTTATTTCCGGAGGAAATTTTAACAAttgtacatttaattttaatacgaacactcCACCAGCGAA

Protein

Uniprot

Uniprot term	Description
P41110	Eukaryotic translation initiation factor 4 gamma 1 OS=Oryctolagus cuniculus OX=9986 GN=EIF4G1 PE=1 SV=1
Q6NZJ6	Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus OX=10090 GN=Eif4g1 PE=1 SV=1
Q04637	Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens OX=9606 GN=EIF4G1 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854	MIF4G	MIF4G domain	Repeat	Interproscan
PF21363	TRAF3_RING	TNF receptor-associated factor 2/3/5, RING domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003890	Domain	MIF4G-like, type 3	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR049440	Domain	TNF receptor-associated factor 3/5, RING domain	Interproscan
IPR045208	Family	Initiation factor 4G	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23253	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0016281	Cellular Component	eukaryotic translation initiation factor 4F complex	Interproscan