Gene detail

Detailed information of ENSDJXP00000049105.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_047139186.1, leucine-rich PPR motif-containing protein, mitochondrial [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDJXT00000056562

ATGGATTATAAGAAATATTTCGGTGACCGGCGcaatggaaaattaaaaatggcgttCCTGTTGGGGAAGAACGTGCGCTCCTTTCTATCGCCAACTACTGCAATAGCTTGCAGATATCGCCACGCTGTTCGCTCAATTTCCAATAGTTATGGAATTAGATTATCCCTTCAACCACTAGGTAGCAGTTTCAAAAAAACGCAAGGCTCTAGATTTTGTAGATTACTAGAGACAGCTGCAGCAGCACCAAGCCTGGAAACTATTGCTGAACGACcaaatgaaaaagatttaacCTCGAATCAAAAGAAAGCAAGCGACGATGCTCAAAGGATACCAAAATACAATAGGTTTAAAACAAAATCAGCTTTCTTAAAGCATTTTAATGAAAAACTTGAATCAGGGGAAGTATTGACTACCGCACAAGCATTTGCCTTTTTGAAATCTTGTGGACCTCGAATGGTTGGCGAAACTGATGCATCCAGAAATGAGCTAGTTAATTATGTCTGGAAAAAGCTTGAAGAAAATGGAGTTCCATTACAAACTGGACTATGGAATACTTTGTTATCTGTGTATGTTGAAAACAATCACGATTTTGTACCATTAGAATTTTTACGAAACGTATGGGAAAAGTCTTCTGCTGAACCAAATAAAacAACATTCTCATTACTCATTCAAGCTTATGCAATCAGAGGAGACCCAGCAGGAGCCATGAAGATTGTTGAATTTAtgatgaataataataatgcaAGAATGACGGAACATATATATGCTTGGTTGGTCAAAGCTTTTGCAAAGAAGGGGGATATGGAAGGAGTTGACGAAATTCTGCGTTCAATGAGGGAGAGTGGGATTCGACCAAGACATACAACATATGGTCATCTTATAAATGCTCACGCTGAAAGAGGAGATCTAGAAAGTGTAAATAAGGCCATCTTGGAGATGATTGATAAAAGATTGTATCCAACAGCTGATATATACACAAACCTTATCGATCATCTTTCTCACGGTGGTCATCATGAATTAATCCCGCAAGTGTGGGAACGTATAGAATCTATGGAGTTCATGAATGAGGACATAATTCCATTAGTGCAAAAATGTGTGACAAGAGGCGACTATGATAGTGCTTTAACTTTACTGCTGTGCTCAACCAAGCAATTAACAAAACAAGAAACTTACTACCGCTACCTTCAAACAAGAATCTTCAGCATGTTAAGATTTTCTGAAAAAgatttatcTGAGTATACCAAGGTGATAGAATTGTTTGGGAGACGATTTTCAATATCAATGATCTCAAGATTGTATTCAGTTGTGAATTTCTTTTTATCCAAGGATGAGCCAGAAACTGCTGTTGATGTCTTGGAAAGAATTATAACTGATAAATCAGTTAAAATCCAAATATTCCATCCAATCTTGAAATACTATGCTGATAAAAAGGATGTACATGGTATTGTGAAAGTATTCAACTTTGTCACTGAAAAAGGATTGAAATTAGACTACTACTGttataaaaatattcagCCAGCGATAGATGACATGGAAAGTGAGGAGTACAAAACATTTATTAGTCTCATAAAGGAGAACGAGAAAATAATATTACCATTTCACATTGTTTCAACAATGTTAAAAGAGGACCATGTGGAGCTGAGTAAAATCGGCGATATAgTTGACAATGCATCGCCAGCAGACTTATTTAAATCTATGAAATTGCTGAAAGAAGCTTTAACTGGggaTTTCAACCCAACTGATGCTTCTAAGATAATCAAAGTCTTGCACCAGCGAGGAATGACAGATATAACTGTGCTAATTGATGAAGTAATGTCTGGCTTGGTAGTTCATAAAGAACCCAAAACAGATGAAGCATTACAATTCTTGAAGTTGTTGATGGAAAATgaTGTACCCATCTCATCTCATTCGTacacaaaaatgttaaaatcatTGCACGGTAATGGAATGTCAGATCAATTTTTTATGTTTGTGCGATTAATGAAAGAGCATGGCATTGACCCAGATGCGCACCAGTACTATCAAATGTTAAAGATGGCAGCTTCAGTTGGAAATAGCATGGCGGCTCAGTTTTGTTTTGACAAAGTACAGGAGTCTCCTGATTTTCCAGACCGCAAACATGAACTTTACGAGTACTTGATTACAGCCTATGGAAGAGATTCAGAAAACTTTAAAATCATTCCAACATACATTCAGCCTCGGGATTCGGAGAATGGGTTAAAGGTTATACAACTATTTGAGGAAATGCAAGAGAAAAATTACAGGCCAAGTCCTGGCACTATTACTCAAGTCATAAAAAGTTACTTGCTGCGAAGTGATATTGAAGGTGCCAAAAAAGTCATTGAAGAATATGGTGAAGGAAAAGAGCAACTAAGGAAAAGTGTCAAGAATTCATTTATGAGAGCCTACGTGGCAAGTAAAGATTTTGAAGCTGCTGAAAATCTATTCAACCAAATGAAAGAAGAATCCCTCCTCTCTTCTCTACAGTACAATGAAATGATGCGCATGTGTGAAATCACAGGGGATACTGAAAGAGTGGAGTCTTTGTACAAAGAAATGCTCGAGAACAACTTTCAACCAAACGTTTTTACCTATCTACATCGTATCCGTACCTTTTTGGCGGCGAAACAGCCGGAAAAATGTATTgatattataaaagaaaatatagcCAGTGGTAAAAATCTTCTTCGCGTTGATATATTCATGATTGTGTTACGACATCTCGTGCCCACTGGAAATACAGAAAACGTCAAACAAGTGATTGACTTGATTAAAGAGCACCATCTGACGAAAGTACCACCCAAACGATTAGATCATGCATTGAGTTTGGTGTACGTAAAAGCAGGTGACATCGAGGAAGCGTCAAAGTTACTACCAACGGCAGCCAGTGGATCAGATGAACCTGTGGAGATTGAACTAAACCCATATCGCAAGGTTGCAAAAACTGCTTCACTTGAAGGGGATGTTGAATATATAGAAAATATCATAAAGTTTCTAAAAGTGAACGGACTTCATTATCAATCACTGGATACGTTTTATTTGTTAGCCTTAAATCGCAGAGATGACGTTGACGGAATTCGACGGCTGCATCAAGAGCGAATTGACGAGGGATCGGCACCGACAGAAAAATTCATGACCATGCTTGAATCGATCATTGAAAGCAGAGggattaaagattttccattgCCTCGATAG

Transcript

ENSDJXT00000056562

AACAAGCCCGACGACAGAAGCAGATAGAATGAAATAATTCGTTTTTCTCTTCCTTCTTTCGCAGATAGCTATTTACTCCTGAATTAGCATGTTATTTCAACTTTCCTTGAGGACAGGAATggaaaaaattatacaaattaaAGAATAATTAACAGATAGTCAATCAaattatagtatttttttttgttcctttctttttcttttgtttttgagaGTGGAACTCCGGCTTTAGAATTATCCTGGGTACGAGGATGGATTATAAGAAATATTTCGGTGACCGGCGcaatggaaaattaaaaatggcgttCCTGTTGGGGAAGAACGTGCGCTCCTTTCTATCGCCAACTACTGCAATAGCTTGCAGATATCGCCACGCTGTTCGCTCAATTTCCAATAGTTATGGAATTAGATTATCCCTTCAACCACTAGGTAGCAGTTTCAAAAAAACGCAAGGCTCTAGATTTTGTAGATTACTAGAGACAGCTGCAGCAGCACCAAGCCTGGAAACTATTGCTGAACGACcaaatgaaaaagatttaacCTCGAATCAAAAGAAAGCAAGCGACGATGCTCAAAGGATACCAAAATACAATAGGTTTAAAACAAAATCAGCTTTCTTAAAGCATTTTAATGAAAAACTTGAATCAGGGGAAGTATTGACTACCGCACAAGCATTTGCCTTTTTGAAATCTTGTGGACCTCGAATGGTTGGCGAAACTGATGCATCCAGAAATGAGCTAGTTAATTATGTCTGGAAAAAGCTTGAAGAAAATGGAGTTCCATTACAAACTGGACTATGGAATACTTTGTTATCTGTGTATGTTGAAAACAATCACGATTTTGTACCATTAGAATTTTTACGAAACGTATGGGAAAAGTCTTCTGCTGAACCAAATAAAacAACATTCTCATTACTCATTCAAGCTTATGCAATCAGAGGAGACCCAGCAGGAGCCATGAAGATTGTTGAATTTAtgatgaataataataatgcaAGAATGACGGAACATATATATGCTTGGTTGGTCAAAGCTTTTGCAAAGAAGGGGGATATGGAAGGAGTTGACGAAATTCTGCGTTCAATGAGGGAGAGTGGGATTCGACCAAGACATACAACATATGGTCATCTTATAAATGCTCACGCTGAAAGAGGAGATCTAGAAAGTGTAAATAAGGCCATCTTGGAGATGATTGATAAAAGATTGTATCCAACAGCTGATATATACACAAACCTTATCGATCATCTTTCTCACGGTGGTCATCATGAATTAATCCCGCAAGTGTGGGAACGTATAGAATCTATGGAGTTCATGAATGAGGACATAATTCCATTAGTGCAAAAATGTGTGACAAGAGGCGACTATGATAGTGCTTTAACTTTACTGCTGTGCTCAACCAAGCAATTAACAAAACAAGAAACTTACTACCGCTACCTTCAAACAAGAATCTTCAGCATGTTAAGATTTTCTGAAAAAgatttatcTGAGTATACCAAGGTGATAGAATTGTTTGGGAGACGATTTTCAATATCAATGATCTCAAGATTGTATTCAGTTGTGAATTTCTTTTTATCCAAGGATGAGCCAGAAACTGCTGTTGATGTCTTGGAAAGAATTATAACTGATAAATCAGTTAAAATCCAAATATTCCATCCAATCTTGAAATACTATGCTGATAAAAAGGATGTACATGGTATTGTGAAAGTATTCAACTTTGTCACTGAAAAAGGATTGAAATTAGACTACTACTGttataaaaatattcagCCAGCGATAGATGACATGGAAAGTGAGGAGTACAAAACATTTATTAGTCTCATAAAGGAGAACGAGAAAATAATATTACCATTTCACATTGTTTCAACAATGTTAAAAGAGGACCATGTGGAGCTGAGTAAAATCGGCGATATAgTTGACAATGCATCGCCAGCAGACTTATTTAAATCTATGAAATTGCTGAAAGAAGCTTTAACTGGggaTTTCAACCCAACTGATGCTTCTAAGATAATCAAAGTCTTGCACCAGCGAGGAATGACAGATATAACTGTGCTAATTGATGAAGTAATGTCTGGCTTGGTAGTTCATAAAGAACCCAAAACAGATGAAGCATTACAATTCTTGAAGTTGTTGATGGAAAATgaTGTACCCATCTCATCTCATTCGTacacaaaaatgttaaaatcatTGCACGGTAATGGAATGTCAGATCAATTTTTTATGTTTGTGCGATTAATGAAAGAGCATGGCATTGACCCAGATGCGCACCAGTACTATCAAATGTTAAAGATGGCAGCTTCAGTTGGAAATAGCATGGCGGCTCAGTTTTGTTTTGACAAAGTACAGGAGTCTCCTGATTTTCCAGACCGCAAACATGAACTTTACGAGTACTTGATTACAGCCTATGGAAGAGATTCAGAAAACTTTAAAATCATTCCAACATACATTCAGCCTCGGGATTCGGAGAATGGGTTAAAGGTTATACAACTATTTGAGGAAATGCAAGAGAAAAATTACAGGCCAAGTCCTGGCACTATTACTCAAGTCATAAAAAGTTACTTGCTGCGAAGTGATATTGAAGGTGCCAAAAAAGTCATTGAAGAATATGGTGAAGGAAAAGAGCAACTAAGGAAAAGTGTCAAGAATTCATTTATGAGAGCCTACGTGGCAAGTAAAGATTTTGAAGCTGCTGAAAATCTATTCAACCAAATGAAAGAAGAATCCCTCCTCTCTTCTCTACAGTACAATGAAATGATGCGCATGTGTGAAATCACAGGGGATACTGAAAGAGTGGAGTCTTTGTACAAAGAAATGCTCGAGAACAACTTTCAACCAAACGTTTTTACCTATCTACATCGTATCCGTACCTTTTTGGCGGCGAAACAGCCGGAAAAATGTATTgatattataaaagaaaatatagcCAGTGGTAAAAATCTTCTTCGCGTTGATATATTCATGATTGTGTTACGACATCTCGTGCCCACTGGAAATACAGAAAACGTCAAACAAGTGATTGACTTGATTAAAGAGCACCATCTGACGAAAGTACCACCCAAACGATTAGATCATGCATTGAGTTTGGTGTACGTAAAAGCAGGTGACATCGAGGAAGCGTCAAAGTTACTACCAACGGCAGCCAGTGGATCAGATGAACCTGTGGAGATTGAACTAAACCCATATCGCAAGGTTGCAAAAACTGCTTCACTTGAAGGGGATGTTGAATATATAGAAAATATCATAAAGTTTCTAAAAGTGAACGGACTTCATTATCAATCACTGGATACGTTTTATTTGTTAGCCTTAAATCGCAGAGATGACGTTGACGGAATTCGACGGCTGCATCAAGAGCGAATTGACGAGGGATCGGCACCGACAGAAAAATTCATGACCATGCTTGAATCGATCATTGAAAGCAGAGggattaaagattttccattgCCTCGATAGCTCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535	PPR	PPR repeat	Repeat	Interproscan
PF13812	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan
IPR050667	Family	Pentatricopeptide repeat-containing protein	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47939	MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17964	LRPPRC; leucine-rich PPR motif-containing protein, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala