Gene detail

Detailed information of ENSDJXP00000050652.1 in Hydractinia echinata

Genomic Location: not available for this species
NR annotation: XP_047134337.1, non-structural maintenance of chromosomes element 4 homolog A [Hydra vulgaris]
Species Hydractinia echinata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDJXT00000058527

cAAAATTGGGGTTGCCCCCTAGGATACCTGTCTCGTCTTTATGCTACTCGTGTTTAAAAAATCTCGCCTTCTCTTATCAAAAGtaagacaagaaaaaaaaaaaatagcgaGTTTGTGTACTAAAAACCCCTGATGTTTCATAGATGCCGTTTTCGGTTTtggtgtgtgcttcacataaaaTCATCTGGCGGGAAATTTTGGACATGTGACGTGTGCAAAAAACATTCCTCAAAGTGAACAAAATAACGATTTTGGAGATTGATCTAGCTGGGTGTATTGTATTTAAAACTGACAATGGAAGACAATGAGAATGAAACCACAGAAAATATGGACGGTTTAAATGAAGAAAGTGAGTATGATGACCCTCTTGTACGCAGAAAAGTCCGAGCTGATTATCGAATGTTGCACAATGATATTGAAGaACAAGGCGAAGAAGTAATTCATCCAGATTCAACAAAATTGATGGAATACTTTGAGAAAGGAGAAGCCTTGTTTCAAAAAGTACGACATCCACGTGAAGCTGTCCAAGATTCAACGTTTCTGTTAACACTAACAAAAAAGAGTAGGGAACAGGCACAGCAGCTAAAAACAGATGTTGTATCGTTTGATAACTCCACATTTGCAGAAAAATTAATATCTTATGTGAATGGAAGACATGTAACGAGTGATGACAAAGAGGACGTGGACCTTAGTAATGATGCTTGGAAGAAGTTGGGTGATCGTGCAGCATCATGTTTCAAAACCACACCTAAGTTCGATTTCCTATTGGGTCCTTTGGTCATTGAAGTTGTTGTCAAGGAGAAAAGAGTTGcggaaagaaaacaaaaagttcCAGAAGGAGAAGTTTTAAAGCTAAAGCAGATTGATAGTGTGGAGAAACAAGAAGAAGCCACAACAAAGGAGGTCGAGAGGGTGTACAAATTGTTGAAGAAAGCCACCCAAGGTGGGAAAAGCCAAATCTGTTTGTTCCGATTCATAATTAACCCAGGCTCATTTGGACAGACGATcgaaaatttgttccatttcTCTTTTTTGGTCAAGgATGGCCGAGTGATAGTTGACCTGGATGAGGATGAGCTGCCAATTGTCAACCTTCATAAAGAATACAGAGAAAAAGATTACGAAGAAATCGTCTCTCGAAAACAAATCGTCATGCCGCTAAACATGCGTGATTGGAAGGAACTTATCGACGTATATGGTATCACGGAATCTATGATACCGACCAGAAAATCCGTACTGTCAACCTGAGAAACATGATAACCCACTATTCATGATGTTCTCTCcacctggattgaaattcagaGGGCATCGCATACGGCGTGATCCTATGTTCATTCTCGTAACGATACCATTAAGAGAAACGGACTGAAAACCGTTTACGAGCAACTTACAATAAACTTACGAGCAACTTGCGATAACGATTATTTTTATAACTAACAGTGTGTGGCGGAGGTTTTCCTCtagaaaattaatttatatttttatagtcGCTTTTTGAAGATACAATGTATTTTTACTTGTGTTATGGCTGGCGTTGTAAATTAACAGTTTCAAACAGTTGAAGCGTCGCCACAAGCTCAACCAGATATGATTACTTTAAACGGAGAAAGCTTCGCAAGTCCAAAAACTCACGaaagtgttgttttttttagataaagtTTCGCCAATCCAAAAACTGCGACATCTGAATTTGGAAAGTTTTCTCTAGATAAACTTTTCGCgatttgtaattttgttttcgAATACACGCTGAAAGAATGGTTTACCTTTGGCGTCGCaagattttttttgcagaagAAAATAAGGTACAAATAAGCAATTCAACATCTTACAAATAGATAGGCCCttttaataataatagaaaaaggGAGAAAAGTCTTTTCCAGAGACTGTTGTTATGTTATggattaatttctttaaaatgcgtGCAGGGTGGCTACTACTAAGGCAGCTACTACTAAGGCAGCGTTTACATGAAGCCCGTAGTGAGTTCAAACCGGTTTGACTTTCGCGCCGGTTTGAGATCGCGCTCTTGTTTACATGACCGTTTTCAATACGGCTTTGGCGAGTGAAAAAAAATCGTCCCACTTGTACTAGTTCCAGTTCTATTTTCACTAGTCCTAGTCCTATTTCGCTTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2TBI1	Non-structural maintenance of chromosomes element 4 homolog A OS=Bos taurus OX=9913 GN=NSMCE4A PE=2 SV=1
Q9NXX6	Non-structural maintenance of chromosomes element 4 homolog A OS=Homo sapiens OX=9606 GN=NSMCE4A PE=1 SV=2
Q6BDR8	Non-structural maintenance of chromosome element 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nse4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005991 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15412 all species →	Nse4-Nse3_bdg	Binding domain of Nse4/EID3 to Nse3-MAGE	Domain	Interproscan
PF08743 all species →	Nse4_C	Nse4 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027786 all species →	Family	Nse4/EID family	Interproscan
IPR029225 all species →	Domain	Nse4/EID protein, Nse3/MAGE-binding domain	Interproscan
IPR014854 all species →	Domain	Non-structural maintenance of chromosome element 4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16140 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22825	NSMCE4, NSE4; non-structural maintenance of chromosomes element 4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.