Gene detail

Detailed information of ENSDJXP00000051972.1 in Hydractinia echinata

Genomic Location: :...
NR annotation: XP_047133658.1, nucleolar protein dao-5 isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDJXT00000060227

CAAGGAACGTTGGCTCTCTTAAAATCCAAAGAGTTTCTGGTTTCTCGTTGTCAGCTAGCCAGCTAGCAGTGAAAGTGAAAGCCATGTGTTGTTGTCCGTGGCTTTTTGCAAGAATAATTATTATAGCCTCGTTTTGATCATATCATCCATCAATCACACAGGGGTTCCAAGCGTGACTTTTTTCTCGACCATGTGAAACAACATTCCTTTCAATCTCGTGGTGTTCAAAAGTCAGTCGATTCGGCTGAACTAAATCACCCAAAAACGCATTACTACTACTACATTACATAAACATAACTATGGCTAAGTCAAAAACTGAAACTAAAATTAAGTCAACTACCGAGAAGGTGAAAAAAGGGAAGAAAGAAAAGGCTCCGCCACCTCCTGAGTCTTCTAGCGATGAGAGCGAAGAAGAAGTAACTACTAAAGTTgcaaagaaaaatgttaatgGTGTTGCAAATGGCAAATCAAATGGAAAAGCTAAAGAAACAGTAAAGAAACCAGCTGCTAAAAAAGAATCCAGTTCTGATGATAGTAGTGACGAGGAAGAAAAAAAACCAACCGCAAAGAAAACTCCTGCTAAAAAAGAGAAATCAAGTTCAGATGATAGCAGTGATGAAGATGAAAAACCTAAACCTGCAGTTAAGAAGACCACAAAAAAAGCTACTGCTAAAAAAGAAGAATCAAGTTCAGAAGAAAGTtcagatgaagaaaaaaaacctgctgctaaaaaagCACCTGCGAAGAAAACACctgctaaaaaagaggaatcTAGTTCTGAAGAGAGTTCAGatgaagaaaaagaacaaaagaaacCCACACCAAAAAAagCACCTGCAAAGAAAACGGCTGCTAAAAAAGAAGAATCTAGTTCAGAAGAAAGTTCTGATGAGGAAGAGAAAAAAGCTTCAAAGAAAGCACCCGCAAAGAAAACACCTGCAAAAAAAGACGCGTCAAGTTCAGAGGAGAGTTCGgatgaagaaaaagagaaacCCAAAGTTGCCACCAAGAAAGCTGCTGCCAAGAAAGAATCAAGTGATGATGAAAGCAGtgacgaagaagaagaaaaaggacAGAAAAAAGGTAAAAGAAAAGCTTCTAAAGAGTCAAGCTCTGAAGAAAGTAGTGATGAAGAGGAGAaaccaaagaagaagaaagCTAAAGCTCAAGAAACTAAGAAAAGAAAAGCTGAAGACGATGAAGATGACGAAagcaataataattttaaaactccTAAAAAGTCAACAGGTGAACCCACTAGTGTTTTTATTGGTGGACTGGCATATAGCACTGTAGAAGAAACATTGAAAGAGTTTTTAGAACATAATGATCTGCAACCAACCAGTGTTCGAATCATATCACGTGATGGTCAATCGAAGGGATTTGGTTATGCTGATTTTGATAGCGCTGAAGAAGCTGCTAAATGCATAAACTTATCAGGCTCAGAGTTAGATGGGCGTAGGATAAGATGTGATAACGCTGATAACAAATCAACGCCATCGAGTGGTGGACGCGGCCGTGGCGGAAGAGGTTCCTTTGGCTCTGGAGGACGTGGTCGAGGAGGGAGAGGTTCGTTTGGCTCTGGCGGCGGAGGAAATAGGTTCGATAACGAAACTCCGACAAAGCTTCTTATGGTGAAAAACTTGTCTTACAATACAGACAATTATAGTCTCGCTGCGGCGTTTGAAGGAGCTAACGATGCTCGAGTAGTAAAAGATCGTGAAACTGGAAACTCCAGAGGTTTTGCCTTTGTGGAGTACGATGATGTCGATTCTGCTACTAAAGCGCGAAAAGCTATGCTTAATCAAGAACTTGATGGCCGAGCAATCAATGTTGTGTTTGCTACGCCTAAAGAAAGTTTCGGTGGTGGTCGTGGTGGAGGTCGCGGTGGATCAGGTGGACGGGGACGTGGTGGCGGCTTCGGAAGGGGGCGTGGCGGCCGCGGTGGGGGGCCTACAGCAGCAAGTAAAGGTTCCATTCAAAAGTTTGAAGGATCAAAATTAACTTTTGGTGATGATTCCGATTAAGAAGTGGACTGATGAGGTTATAAAGGCTGGAGCTGGTCGAGAAAAGACCTTTCCATTATAGAAACGATAGTTGCAGTTTTACACGATATCCGTGtgaatatcagaaatatcgatAACCGGTTCGATTTTAACGACTAACTTTGTTTTATTTGCCATTTTTTTACTAACAGCGTGCGGAGTTTTTATCTGCCGAATAttgcttaaaattttatttttatttctttttaacgTATACAAATTTTCATATATTGGCAGGATAACTTAACAAAGTCTTCTacttttagttaaaaaaaaattctgaaggtggtaattttttctcatttgtgAAACTTTAGGCTTAGGTATTTCTATTTTATCGTACGTTTCTAGCGCTGGGGTAGGAAATTCCATTATTTTGAGTTGCTATAGCGTTgtgtaaatataaaatatagtaATGCAGTTGTTCAGAAACATCTAAAGAACAAAATTTGATGCAGTTATTAATTGACTTTACGTTTCAAACGTTTTAAATCCTTTCCTTTGAAGCTTTCCCATAGTCTTGGTAAGCCGTATATCCATGGGTAAGCAAACCAACGGTTACcctatttatctaaataaacATTAACATCTTCATTCGAGCCTGATAACACACTCCTCTCGAATTGCCCGGTATAGTTGAGGTCCTATAAAATAACCTCTGTCCGtccattttaaatattttttggaattggatcattatttttttctgatttgatTGAGAACAATGTGACGAAgttagttttttttgaaaatgtcttagcggtttaaaaatggcggatttaTCCGCAAGATGACCCACAACGATCCAAAAATACAGATTTTCGAACTTATCtgaggattttttttaatgcttgAAACAAATTTGCTTATTCTTTATCATCCAAGCAGCTTCCTTGCTTGACttaccatttttttatttttcgcacgTTTGAACAAGAGTTTTGCTTCTAAGTTTCTTTTGACCGCTGACATCTTGATCGA

Protein

Uniprot

Uniprot term	Description
P19338	Nucleolin OS=Homo sapiens OX=9606 GN=NCL PE=1 SV=3
Q4R4J7	Nucleolin OS=Macaca fascicularis OX=9541 GN=NCL PE=2 SV=3
Q5RF26	Nucleolin OS=Pongo abelii OX=9601 GN=NCL PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR051106	Family	RNA-binding and splicing regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48028	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11294	NCL, NSR1; nucleolin	-	Chromosome and associated proteins	ko03036	deepkoala