Gene detail

Detailed information of ENSDKPP00000007965.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: XP_027042492.1, uncharacterized protein LOC113670535 isoform X2 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDKPT00000007965

TCACTTTATGAAAAATACATAACCAtcttatttctttcttcattttcgCTCATGCGTGACTGGTAACTAAACTATCCCATCAGCGACTATCAAGACTTAGTAGGGTCATAGAAAGCAGCGAAGAAATAGAGATGAGTTTGATGAAACGGAACAAGACACACAGGAATACGGAGAGCGAGACGACTTTATCAACCTGGCACTGACTTCTATACTTCAGCGGGATTCTACAGTAGGACGGCACACAGGCTCAAACTTGTGTGTTGAAGCTGGAAGTGAACGCTTGCGCCACGGAGCTTGCGATGCCCCATAGAGATATGCTTTTAGGTCCCGGCGGCGTAAACCAACTTGGAGGCGTTTTCGTCAATGGCCGACCTCTGCCCGATTACATGCGACACCGCATCGTGGAGCTTGCACACTGCGGGGTTCGCCCGTCGGAAATCTCTCGGCAGCTCCTCGTGTCGCACGGTTGCGTCAGTAAGATTCTCGGGCGCTATTACGAGACGGGCTCGGTTAGACCTGGAGCTATCGGAGGAAGCAAGCCGAAAGTAGCGACTCCCAAAGTTGTGGCTAAAATCCTGCAGTACAAGGACGAAAATCCGTGTATTTTTGCCTGGGAGATCAGGAATAACTTGCTAGCGCACGATGTTTGCGACAAATCAAACGTCCCTAGCGTTAGTTCCATCAACAGGATTTTACGTAACCACGCCGCCGAGAAAGAAGCCGTGGCTGCTAAGGAAAAAGCCAAGCAACAAGTGCAGCAAATGCAGCAATTACAGCAGCAAATTGGCACTTCTCACCAGATGAACGGATTCCAGCCACAAATCAGTTTTACTCTCCCCCAAGCTCCAGGAATAGCGATGCCCGTGAATATTTCACCCCAGCAGCCATCGCCGGTCCAGCCTGCCCAGATTACAACCCAGGCTCCCGCGCAGCTGCAGACGGCCGTGAATGGCAAGGGCCCGCAAGACGCTCAAGACGCCCAAGACGTTACAGTGAATGAGGAGGACAATGAACGGACCCAAAACGGACATAGTACGCCACACAACGGAGAAATGAGCGTCAAGGAAGAGTTAAGCTCCAAGAACAACACCAACCGCAGTCCTCATGACGACGAACGGAAGCGGAAGTTGGATGAGCTACAGGTTAACGGAAACGGAAATCACGAAGAGCATTTGAAGAAAGAGAATGGACAACTTACTGACGTCAATGGCAACGAGGGACCGGagtcaaagaaaagaaagatgaCGTATGTAGAGAATGGCAGGACGGACACGCCTGTGTACACAAGAGTATCACCAACATGGATCAAGTACAATCCCGTGATCCCCAGCGGCTTTGCCATCGCCAGTAGTCTGAACGGTATCAACGCGATTGGGGATTTGAGCGGGCTGAGCGTGAACGGGTTAAATGGGTTGAACGGGATTGGCGCGTTAAATGGAATGAGCGCCGTACAGGCCATGAACGGTATCAACGGCATGGCGTGCACGCAGGTAAACACGTTAAACGGGATGAACGGGTTAAACGGGATGACCAATGGGATGACGAACGGAGTTGGGATCGTCAACGGCACAAATGGAATCAACGGACTGAACGGACTTACAGGAATCAGCACCATTAATGGAATCAACGCTCTGGGAAATTTGGCAGGATGCCAGACGATTAATGGGATGAACGGTGTCAATGGAATTCACGCGGTGAACGGTCTAAACGGCCACAACAACGGCGCGCTTACCCAGCATGCATTGGAGCAGGACCGCGTCAACGGACAGGGTGGGACTAACGGGCTGACTGATGGCACCCTTCACTGGTCCCCACCGTATCCTATTGTCTGCTTACCGGAGTCTAACTACACGACAGGCCTGGCACAGACAAACGGCATTGCGAAGATGGACAATGCACCACCTCAAATTacttttcaagtgaacggcaCACCGAGACCCAGCATGCAACACGCGTCCACTTCGGTGTGCACGTCGGTTTTCGCGCCAGTTACAACCGCGAACGCGCGCAATCACAGCATGGGAAACCCGTTGACCAACGGTATACAGACCATGCAGTTCTCTCGCTCCATGCCTACCGAGTTCACCTCACCATTTATGAAGTTTGTGGCGCCTGCGACATTTCTGCCGCTCAGGCCTTCAACGATGGCGTCAGTTGACACGATTACACATGGTTAGAGGGCAGCCTCGTTCTTAGGTAGCCTCGTTCTCGGGCTCTTATGGGCTGGAGGCTTCCAGATGAAGAAAgcacagaaagaaaagcacGAAGTAAGGCTTTCATTGCCCTGATGCTTTTACTGCGCGTGGATGTGCAGGTTTGTGGGCGAGGAGAAATTTGCccaaatggttaaaagttaaAGATTATTTAACAGTTACAGTCATATATCTAGTAACTTGAATTATATATAATGCGTCTTAAGGTATATAATCATAACAGAACCCCagtaaaattatatatatatatattgtctCGTTACCGCGGGTTATTTTGTATTCTACCTGCCGAGTATTGCCAATGTTTATACAAGACCTGACTCAAATTCTAAAGATATCTCAAATATTGCTTGGCTTGGTCTTTTGAGTACCCGCAGTTGATGTTAACCTGTGTCTCCGTGTGAAACCCAAAACATGCGAGAAACAATCAAAAATGACAGAGGAATATTTGTAAGAAAAAGACAAACGAGAACCAGTCAGAGACCGAGCTTGTAAACAACATGACCGAGCATTTGATTATTGCTAATACAAATTAACCAGAACGAATTTAAAATATAGGGGCTTCCAAAATGGACAATGTCCGTATGGAAGTAAGATTTCAAAGCTGCGTAGAACTATAAGTCCCTCATGCTTCACTTTTTAACCAGTGTAAATCCGGTACTTaattgtatattattttgcAACACAATTACTTTTAAGAAAACTAAGGTTGCAACTCAAGGATATCATTTCCGTTGATTAAATACGCGAGAATTCTGTGAATTCTAAGAAGTAAATACTGTATACGTTTGGAATATACATGCAGGAAGGATTGCGGGATCGCTTTCGCTCCTGGATTCATCAGTGAGTAAAATTCTCTTATAAATAATCATTCAAAGAAAAACGTATGGTCTTGGAGTGAGAGAATTCCAACTGCCGGCCTTGTTTGAAGTCAAATTAGCACTTGCTAAGTTCCCCATACTG

Protein

Uniprot

Uniprot term	Description
Q02650	Paired box protein Pax-5 OS=Mus musculus OX=10090 GN=Pax5 PE=1 SV=1
Q90268	Paired box protein Pax-2a OS=Danio rerio OX=7955 GN=pax2a PE=2 SV=2
Q02548	Paired box protein Pax-5 OS=Homo sapiens OX=9606 GN=PAX5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00292	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001523	Domain	Paired domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR043565	Family	PAX family	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15608	PAX2; paired box protein 2	-	Chromosome and associated proteins	ko03036	deepkoala