Gene detail

Detailed information of ENSDKPP00000010571.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: XP_020611611.1, tripartite motif-containing protein 45-like, partial [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDKPT00000010571

GTTTCTGATGGAGATGTGGGCAAACTGCAGGCAAACTTTTGGGTCAACAACTTAATAGGTTTCCTAGCAATCACCTCCAGTGACAAAGAACAGAAATTAATCTGTGAGAACTGTGACAGTGGTGATACTGCAGTCTCACGATGTAGTGACTGTTGTGTGTTCATGTGTGACTTCTGCGTGAAGGTACACAAACGACTGCACAATCTCAAACACCACCAGGTTGTTTCACTGGAAGAAGTCAAATCAGGCAGTCCCAAAGCCTTGATTAAGCCAATGCACTGTGACAAGCATCGTGGTGAAGTTTTAAAGCTCTTCTGTCAAACCTGTGACAAACCAATCTGTCGTGACTGTGCAATGGTTGACCACCAAGGTCATAAATATGTGTTTGTAGTAGATGCTGCAACCAAAGAAAAAGACTCTTTGAGAAATCTGCTTGAGAAGACCAAGGTCAAAGTTCCTGGTCTTTATAATGGTGTGAAATCAGTGGAAGAAATGGAAAAAAGAGTGCAGGTGAAGGTAGCAGTTGTCAACCAACAAATTGATACATTTAGAGATAAGCAGATCAAGGCCTTTGAAGAGATTATTGCAAGTTTAAAACATGAAGCAAGAACCATTGGTCAAGCTAAAATGAAGCAGCTTCAGGCACAGAGAGAAGGTTTGATGATTGCACTGGCCAGCATCAACAACAGCATAGATTTCACAGAGCGCACTCTACAGGATGGAGGTGATGTTGAGATACTGTCCATGAAGAAACAGCTGGTGACAAATCTATCTAAGCTGAACTCGTCAACCTGGGATTGTGAGCCCTGTCAGAAGGATGGATTCCTACTGAAAGTGCACAAGGATATTTGGCAGGTGGCTGGAAATACTGCAACAGTGGATGACTTCTACGTTGTGCCAGAGAAATGCACTGTCAGCTTGGGGGGACGTGCACTAAGTCCTAAAATTCCTAAAACCATCTATGAAGTATATGTTGGAGTAAGAACAGAAATGATTATGGTGGTGTTGGACAACCATGGAAAGCGGACAAGTGGACAAGTGGTCCATGCTTCAGTTACGAGAGTTTGTCCAGGTCAACAAGAGCAGGCAGCCATGAGTGCCGTTATTCCAGTGACTGAAAGGAGTGATGACAGATACTTTAGTGCCTTTACACCACCATCGCAAGGCAATTATTGGTTAAATGTGAAAGTCTCAAGTCAACATATTGGAGGAAGCCCTTTTAGGTTGAACATCAAATCAAGAACTCACCGGCAACAGTGTACAAGCCAACAGAAATCTCGTTTTAATCCACACCTGGTTCCAGAACCGTTATCTGATGAACCGTTATATTATGATGAATATTTATATGATGATGAATATGATGAGGATGATTTGATTTAATTTTATCTCTGATGTAACAGCCATTGTTAACCctttgactcccaagagtgatcaaattcgattttctccttcagtttctcaccagaaatatatcatattgTTATGATTGTCACATGATTATAAATAGGTTTACAGTTTTACTTTAATTGTTTCTTGTCATGCAACCGAGCttagatttattttgtattgcATCATCAATTATTCTTTGTCCCTTTGATTAGTGTAAAGATTGTATTCACCTTTGTTTCAGTTGGAGACACTAAGGAAATGCCTATATGATATTTTATGGGTTCTGTAATCAATAGATCTTTATTTTGTCTTCCGATATCTGCACATACTGTTGTATCATTTAGTTAGTTGTAGTCTGGACTCCATAGTAAGCAGATCGTTTTATTATCAAGTTATCCTTGATCAGATATGTAAGTACCCTTGCTTGTATTCTTACTGCTTTTATTGTAGTTTGGTAATCAGCGCCTTTTAAGTGATTTAGCTATTGTTTTTGTTACCCTTTTTGTATGGCTAGCGCACCATGTCACGAACTTTGTTATTAGTTATTCAAGTACCTTGTTTACTTGGAATTTAGTATCACTTTTGCCTTAATTgtcattatttattttctttagtgTTGCTATTTAGCCCCCTTTTTATATGCTAATTATGCTCAGTTTATCCTTTGTTGCGTAACGCCAAATGTTATTTTATATCACATTAGCGTTACATTATTACAACTGTACATTGCTCTTAAATGGATCGCTTGTCTTTATAGCTTAACTAGTTTTCCTATTTGTAGTATCTAGTAGTagtttttattattagttatACATTGTAATCCTTACTTTCAGTTTAAGAGAACTACAAACCCGAATTATTGTGTTGGCACAGAATAAACCCCATTTGAGCCTTCCATCGACTTCACTCGTTCATTATTCGCTTCTTATGTAAATTATCCCCG

Protein

Uniprot

Uniprot term	Description
Q5BIM1	E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF05384	DegS	Sensor protein DegS	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR008595	Domain	Sensor DegS	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07562	NMD3; 60S ribosomal export protein NMD3	-	Ribosome biogenesis	ko03009	deepkoala