Gene detail

Detailed information of ENSDKPP00000010968.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: XP_032226240.2, lysine-specific histone demethylase 1B-like [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDKPT00000010967

ATGGAGGAAGATAACTGCAGAAGAACAAAACGGGTTCCATGCAAGAAGAGAAGATTTGAGAGCGACAATGATGTTAAAAGTATATTAACATACAGAAAGTGTGGGGCATCTGGTTGTCCGGCCTCAAGGCCAGTTTGTTGTGCTGCGATCAGTAATGAATGTACTGTTGATGGTTATACATCCAGATGGTATCATCTGTCTGATGGGGAGCATTTCTGTAATACCTGCTTTGATCACATTTATCGAAGTCACAAGGCAGGCTATAAAGCATATGCAGAGTGGAAAGCTAACTGGAGCAAAGCAAGTCAAAAGGAAGCATCTATCAAAGCATATGTTGCAGACATGCTTATGCCCTATTGGCTGAAATGTAACAAATGCGGCAAGTGGAGAAAGCAACCAAAAACCACTGATGACCCAACCCCAGAAAAGATCGCATCATGGACTTGTAGAAATGTAGTACAGCCATCCAAGAAAAGAGTTGCAGAATCCATGTCAAATGCCTGGCTAGAGAGACTTGTTGCACGCCCACTGTTAAGAAACAGTCTGGCTGCTCCATTTCTGTCCAAGTCCTATTTTGCTGATGGGGTGGGACTCAGTCCTACAGCGTGCAGCGTAGGAAAAGACGACGCGGTGCCTACATCAGGCTACCTACAACTGTTTCATGACCCTGACAATGTGCAGACAGCCTTCACATTCAGACCAGATGTGATGGAACCCGAGGAGATTGAAGAGTTTAAAGAATTTAGCAGTCACATTCTAGTCCGTGGTCTTGTTAGGGTGCGGCTTGTTTCGGAGGCAAAGAACGTTCTCAGACATCTAACACTGAAAGGGATTGTCAACCATGGAATTATTGGGAACATTCCTGGTATTATATCGACTCCAAAAGAAAAGtTTTCCGTACTGGTTGTCGGTGCTGGAGTTTCCGGGTTAGCAGCAGCAAAGCATCTGGACAGATTTGGAGTAAAGGTGACCATATTAGAAGCGCGGGATCGAGTGGGAGGTCGTGTGTTTGATGATTTCTCGTTGGGTTGCTGTGTGGGACAGGGAGCTCAGATACTCAACGGCTGTGTCAATAACCCTGTGTCAGTGCTCTGTCAACAGCTTGACTTGCCCATGCATCACATGAGAGGGAAGTGTGACCTTCTGCATGGAAAGACCGGCAAATGCGCTGCTGATGATGTGGATAGCAACATGGAATTTCACTTCAATAATTTCCTGGAGGTGATATCGGAGTGGCGcagtgaccaatcagaaacagaAGATATTTCATTACAAGGTACGATATTGTTGGTTTTAACAGAAACAATTTTGATCATTCAGTTAGAAGAGAGCTTGATCGAATTCCACCTGGGAAACTTGGAATACGGGTGCGCGGCTtctttgagcaaggtatccgCCAAGAACTGGAATCAAAATGAAGCTTTGCCGCAGTTTTCTGGAGACGATACTCTTCTCCGGCATGGTTATGCTGCATTGGTGAACGGATTGGCTCGCGGACTTGATGTCAGGTTGAAAAGTGAGGTATGTTTAAGAAGTAAgacccaattttttttttcttttgaaagtcACCAAATGAACTATTTACCAATCTCCATCCCTCTTTTCTTGTTTATGATTTGTTATAAGCAAGGAAACCACTGGACAGCTAACAAGGTCGGTGACGTTGAAATTTACCTGGTATGCATGTGTGTGTGGTGTGCATGTATGCGTGTGCATGTATGCGTGTGCGTGCATGCTTGTGGGCGCGATGTGTTACATGTTGATTTGTTCCTTCACGTGTCTCGCCAGGTTGTTGTCACTTTGCCGCTCGCTTTGCTGAAGTCAGGTAAGGTTAAATTCGTGCCGCCCTTGCCGGAGCCAAAACTAACTGCCATCAAAACTCTTGGAGCTGGGCTGATTGAAAAGTCGAGTAACGTTTTGATGACAGTTCTTAGCGGAGAAGCTGCAGTCGCTGCGCAAAGTGTGAGCGATCAGGAGATTTCTGAGAAGTGCGTCAAGATTCTTAGAAATTTATTTCCAGAGGAGATTGTACCAGAACCTGAAGCGTACTTTGTGAGCCGTTGGGCAAGAGACCCGTTTGCTGGCATGGCGTATTCTTACATCCCCGTGGGCTGTTCTGGTCAGGAATACAAAGAACTAGCGAAAAATATCGATGACAAAGTATTCTTTGCTGGAGAGGCGACAAACCAACAGTTCCCACAGACAGTCACTGGGGCTTACCTTAGTGGCATGAGGGAAGCGACCAAGATAATACCTCTGGAAGAGTGA

Transcript

ENSDKPT00000010967

Protein

Uniprot

Uniprot term	Description
Q8CIG3	Lysine-specific histone demethylase 1B OS=Mus musculus OX=10090 GN=Kdm1b PE=1 SV=1
Q8NB78	Lysine-specific histone demethylase 2 OS=Homo sapiens OX=9606 GN=KDM1B PE=1 SV=3
Q21988	Lysine-specific histone demethylase 1B homolog OS=Caenorhabditis elegans OX=6239 GN=amx-1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01593	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050281	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR002937	Domain	Amine oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19413	KDM1B, AOF1, LSD2; lysine-specific histone demethylase 1B	EC:1.-.-.-	Chromosome and associated proteins	ko03036	deepkoala