Gene detail

Detailed information of ENSDKPP00000011199.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: XP_020627841.1, TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDKPT00000011199

ATGATGCCAGTTTGTGCCGTGTGCGAAAATGAGTCGTTTAACGAGGTCAACGGTCTTTATTATTGCTACATCTGTGGAACACAATCTCAAGTGAATGAGGAAACTGCTGATATGGTTCAAGATCACAACCCACtccacaccacggcaaaccagtggaaatttattaaatttatgaTCTGGTGTTCAGACTATGAAGACAAAGGGCAACCTTGGGTGATGTGTGAAGCATATCAGTTTGTCATCAAAGCTCAAGTTGAAGCACTCATTAAACTTGGAGTCAACCCCAAGCTCAAGGTACAAAGATCAAGGGAACTTTTTCAGGTTTCCAgagccaatcagagtgcgcgaaaagcactattcacttgtgtggtatatactagcATAAGATATTGCAGGCTGGGTTATTATACCATTAGTAAAATGCTTTTCTTGGTTGGAAAAAAAGGTTTACGTGACCATGTGAGCAACAAATGCCTTCAATTATTGCTTATAAAGACTATATTTATCTTGCTAGAGGACAATCCATGCATTGAAAGAGAAGATAAAGATGTGAGAGAGTGTCCTGAAATCAACCCTACAAATGACAGTGAAAACAAAGCTGATGACAGCACTGACAGTGAGACTGAATTTGTTGGCTCCATTGGTGTGCCAGGCATCTTGAGAAGCACAAAACGTCACAAGCTTGGGATGAGTACTACTCTTGCATTTGCATATCTTGGGCTGCTCTGGCTCAAAGAACCAGTCTTTCTATCTGATCTGCTGAGGTATCCTTCAGGGCTGAATAAACTGGCGATGTTAAATAGAATGAACTTTCCGCAGTTCCATAGCAAGTTGTGTGTGATATTTATTTCTCTTTTCACCAGATGGACACGTGAAGGGCACATACCTTTGTTCCGAGTTACCGATATACTGCCAGGCTACATGAAGCTCAAAGAGACTGACTCCATGCATCTGTATCTGCTACACCAAGTGAACAGAGAATGGATCAGGAGAGCCGCAGGCCATGTGGCACAGGCCATAAGGCTGCCAAAGTTCCCCGAACTATGCATGTCTGTCTTCACTTCGAGATTTATTGTTGATCTGCAATTACCAGCTCTGCTACATGGATGTGTTTGGCGGCTTTTGAAGGTTTTCCATCCACGCACACGATTCAACATTCGCGGCAAGAGACAAGAATGGACTGTACCGTGCAATGAGGAGAACGCCATGGCCTACATCATGGTGGCCATGAAACTGTGTTACGGTTTAAACGACACTGACGAGAGtGTATTGTTTTGTCCCTGCAGAGACCAGGCGAATCTAGCAGAGGAAACACGAGATCCCTCCGAGAATTCCCTCCCTGTGTTTGAAGACTGGTTAGGCGGtttcaaaaaatgtttttcagAGCGAGCGAGGAACGGCGTGCCTTGGTCAAAAGAAGAATTGAATCTTCTTCAGGAACCGTCGAATTACGGTACGTTCTGTAAAACGGACATCTTTGGCAAATGGGTGCAACCTGACTTAGCAGCAACCGAGGAACGCAGTCCACATTTTAGACTATCCCCGCTGTGCCGAGCGCTACGGCTCGAAAACCGAGAAAAGCGTTCGGAACTCTTCCGCAGTTTAGTATCTGGTGGTAACCATAGCAACCTAGACGCAGAACAAAAGTCTTCGCCGACCAGCTTCCCCACGACTTGCAGACACACTGCAAGTGGCGCTGATAAAGAAGGAGAACAACCACAAGCAAACTGCAGTCAGAAGTGTTTCACAGCCACGAAGTTGCGGAGAATCCCGTTCGAGAGTCTTCATCCACAAAGGGAAAATAGCGTTCAGGGTTCCAGGTACTTTCTGTACTTGAAGGATGAAGACGGCTTGCGGTCCGTTCATCATTCGTACAACTCTGTTCTTCAGGTTCTGGCCTCGCGCATCGAGACTACACCAGAGCTTCTTCATAAGAGAGTCAAATCGCTGGAGTCGATACTTTTTAGTACCTTAAACAACAGCTATCAACTTCAGTCTGGTCTTTATAACGCAAAATTCGGTGAAGTGGCATCTGCGAGGTATAGCATATGCAGCTAG

Transcript

ENSDKPT00000011199

Protein

Uniprot

Uniprot term	Description
Q1JQD6	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Bos taurus OX=9913 GN=TAF1B PE=2 SV=1
Q53T94	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Homo sapiens OX=9606 GN=TAF1B PE=1 SV=1
Q4R657	TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Macaca fascicularis OX=9541 GN=TAF1B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20645	Rrn7_cyclin_C	Rrn7/TAF1B, C-terminal cyclin domain	Domain	Interproscan
PF11781	zf-RRN7	Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033599	Family	RNA polymerase I transcription initiation factor TAF1B/Rrn7	Interproscan
IPR048538	Domain	Rrn7/TAF1B, C-terminal cyclin domain	Interproscan
IPR021752	Domain	Transcription initiation factor Rrn7, Zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31576	TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001164	Molecular Function	RNA polymerase I core promoter sequence-specific DNA binding	Interproscan
GO:0001188	Biological Process	RNA polymerase I preinitiation complex assembly	Interproscan
GO:0005668	Cellular Component	RNA polymerase transcription factor SL1 complex	Interproscan
GO:0006360	Biological Process	transcription by RNA polymerase I	Interproscan
GO:0042790	Biological Process	nucleolar large rRNA transcription by RNA polymerase I	Interproscan
GO:0070860	Cellular Component	RNA polymerase I core factor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15213	TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B	-	Transcription machinery	ko03021	deepkoala