Gene detail

Detailed information of ENSDKPP00000011998.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: XP_027043208.1, polycomb group RING finger protein 1-like isoform X2 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDKPT00000011998

CTTGCTAGACCTTGACAACTGTTCGCCGAATCGGTCATGCTGCAATACTTCCAGGAAAGCTTTCTTTGCGCCACTTCCGACGTACTTTCGACATCAAAGTCTCAGAAACCTGCCTTTGACAAGATCCGACATgttgtctgagtttgaccagcgGCATTCTGCATTGTTCCCAGGTCTGGACCCAGGTCTCTGGAAAGAAGCAAGATGGCGGCAAAATGGCAGTGATTGCTGCAATTATCGAGCAAAATCTGCCGAGAATTGAGTGACTAAAGTCATGGACTCAGTGGAGGTCGTTCTCAGGCTGCGAGACGTCAACCCGCACATCGTGTGCAGCCTCTGTGCTGGATACTTTGTAGACGCTACAACTATTATAGAATGTCTGCACACATTTTGCAAGAGCTGCATTGTGAAATATCTTCAAACCAGCAAATATTGCCCCATGTGTAACATCCAAATCCATGAAACACAACCTTTAGTGAACCTCAGACTCGACAGAACCATGCAAGATATTGTTCATAAAGTTGTCCCTGGGATTCAGGAAGAGGAAGAGCAAAGGATACGAGTATTTTACGAATCGAGAGGTATGGCTGTGGAAAGACCGTCAACAACAGAGGACCTGGCGTCTGCGGACAAGTCGCAGGAAAATTCCCCAAAGCGAGACTACTCGGAATACAAGAACATGTACCGTGACGACCAGCTGGTTTCTCTCTGTCTGGAGAAACACCGCGTACCTGGCGAAGAGGAACTTATGCCCGTTTCACCTATCCATATTCTGGGAAAGAAGTATCTACGTTGCTCAGTTCGTATGATGGTCATGCACTTGCAGAAGTTTCTTAGAAGGAAATTGAATATCCCAGAAGACAAAGAGATCGATATCCTTTGTAATGGGAACGTCATTCCACCGAGTCGAACTATGAAATTTGTTTGGATTAGCGAATGGCTAAAAACGGAGCCGCCCATAGTGCTACATTACCGCATCACCTCGATACAATCGGACAGTCAGACGCTCGAAGAAATCCCAGAAGAAACCACAGAAAAAGTTGTGGAGCCGACGACAGAATGTACAGACTGCTGAAAAAAGGGCTGCACTATGTTGAAACAGTTATTTTAGATTTTAGAGTTATTTAGCAAAGACACAAAAACACCGTTGAAATAGAAGCACCACGGAAATACGCTCATCGCTCTTTCGAGTCAGCGGTCGTTTTACAAAAAATAGAAACGGCAACAAGTTCAATTGCAGTTTTCGCAGCTTGTGCaacgcttgtaaaacctcaaaGCTTTGCTTAAATTAAATTCCATTCGGGTATAAGTTAGTTTAacacattttctataacaagttgtgcacaagaaaagcgGGACTCGAATTTTCGAGTGACATAcaaatggcgacgaacgctgaccaacggaagtgacgtcagaacGTATTCCCGCGGTGCTAAGTACGTTTATTGCACTTTTCCAGTGCAAATCAGACATATAAACAAAGGTTTATATACAAACATGTTCACTGGCACTTATACATACAAACCATATCCATTTAGTTCGTATATTTCGTCGCCTGTTTTGGCGTAAATTACAAAATACTCTGACGGAGACTTCACGTTCAAAACATGTGAGAATGTTCAATTGCTGTTTACAGAGGACGTTTAACCTCCTAGCCAAAGCCTTGCTTTGCATTTGCAAATCTGTTTTGCTAAATGTATAAAAATAGAACGCGTCAGAggattattataataataaattattgcaAATTCAATCAGGTTCGTTTTGTCGGTTCCATGAGTGCGCGCAACCGATCTTGAATGCAGTAAGATAATTAAAAATAAGAAGCAATATGTTGAAGTGTGTTGCCAAATTTACGAACCCAAAAGCTGCCCAAATAAAACTGCGTATTTCGAAATTTAAATATGTTATATGTTACTTCTATGAGCGCGGGCCGCGTCACACCCGAATATTACTGGTtacgtgtgacgtcatggcggccatgttggagctTCTaatctcgttcccaggctctttcatctcccgacCCCTGTCTCCTTTTTTCGGGGAAAGACTGGGAACAAGGTTGATT

Protein

Uniprot

Gene family

Uniprot term	Description
Q7ZYZ7	Polycomb group RING finger protein 1 OS=Danio rerio OX=7955 GN=pcgf1 PE=3 SV=1
Q6DLV9	Polycomb group RING finger protein 1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Pcgf1 PE=2 SV=1
Q8R023	Polycomb group RING finger protein 1 OS=Mus musculus OX=10090 GN=Pcgf1 PE=2 SV=2

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|RAWUL
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF16207	RAWUL	RAWUL domain RING finger- and WD40-associated ubiquitin-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR032443	Domain	RAWUL domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10825	RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0035102	Cellular Component	PRC1 complex	Interproscan
GO:1990841	Molecular Function	promoter-specific chromatin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11487	PCGF1, NSPC1; polycomb group RING finger protein 1	-	Chromosome and associated proteins	ko03036	deepkoala