Gene detail

Detailed information of ENSDKPP00000013542.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: CAH3030349.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDKPT00000013542

ATGCATTGCCGGATGTTAAAGAGGTCAGTATCTGAGAATGCCAGCCCTCCTCCAAGGAAGCGTTTCTTTCGTTCTGTTTCGACAGTGGAGGGAGGAAACTTGTCTTTGAGAAACGGTCACCCACACCACCCGAAAAGCACGCTGAGAAAGCAACGTTCCATCTTGCCGATTTTTCCTGCGCGCCAGGCACTCATTGCTGAGGTTCGCAGCCGAGCGAGTGTGATTATAGTCGGTGAGACGGGCAGTGGAAAGACGACACAGATCCCACAATATCTGTATGAGGGAAAGCTGGCAAAACTCGGCACCATCGCGTGCACTCAACCCCGAAGAGTCGCCGCCATCAGCATAGCTCACCGTGTGGCTAAAGAAATGGGCGTGCACATAGGAGAGGAGGTTGGGTTTACAGTACGATTTGAGGACGTCACTTCTGAGAAAACAAAGATCAAGTACATGACTGACGGGATGTTGTTACGTGAAGCGATACGAGATCCGCTGCTGTACAGCTATTCTGTGGTTATTTTGGACGAGGCACACGAGCGCACTGTACACACAGACGTTCTGTTTGGAGTGGCGAAGTCGGCCCAGAAGATGCGCCAAGAAAAGGGTCTTAAACAGCTCAAAATTGTGGTGATGTCAGCTACTTTAGATGCAGAACATTTTGCAGAGTATTTTGGACATGCCAGAGTGCTGTACATCGAAGGACGCCAGTACCCTGTTCAGGTCATGTACACGTCAGAAGTGCAGAAAGACTACTTACATGCTGCACTTGTCACGGCCATGCAGCTACACCAAGGGCAGCCAGCAAGTGGTGACATTATTGTGTTCCTTACTGGTCAAGATGAAATTGAGTCCCTTGCTAAAATGCTCAGTGACTGTGGAGACCACTGCCCAGCAGGCTGCCTAAAGTTGATGGTGTGTCCAATGTTTGCAGCACTGCCATCTAGCCACCAGATGAAAGTTTTTCAACCTTCTCCTTTGGGGACAAGAAAAATTATTTTGGCCACCAACATAGCAGAGACATCAGTTACCATTCCAGGAGTCAAGTATGTAGTGGACACAGGATTTGTGAAGGCTAGAGGTTTTCACCCCAGGACAGGCCTGGACCTGCTGAGCGTGCAGCCCATATCCAAAGCGCAGGCGCGCCAGAGAAGTGGCCGAGCAGGCCGAGAATCCAGTGGCGTGTGCTATCGCCTGTACACAGAGGAACAATTTGAAGAGCTGCGCGAAGCAACAGTTCCCGAAATCCAGAGGTGCAGCCTCAGCAATATCGTGCTGCAGCTGTTAGCTCTGGGTATCAGTGACGTTACCAGTTTCGACTTTATAGACCGTCCGTCACAAGACGCCATCAAGAATGCCCTGGAAGAGCTTGTGATACTTGGAcagagtttatcaggaagATCAGGCGATCTCACCACTCTGGGTCATCAAATGGTCCACTTTCCGCTGGAGCCACGCCTCGCGAAGATCATCCTCAAGTCTCAAGAGTTTAGTTGTTCTGAGGAGATTCTCACTGTAGTGGCACTGCTGTCAGTAGATTCCATTACATTCACCCCACACAGCAAGAGAGATCAAGCCATAGCCGTACGCAAGAAATTTATTTCTTCAGAAGGCGACCAACTGACGTTATTAAACATTTACAGAGCGTACAAGGCAGCGGGTGGAAGCAAAGACTGGTGCCACGAGCACTTTATAAACTCTCGCACGATGAAGCTGGTGATGGACATTAGGAAGCAACTTCGAGACTTGTACGTACGATTGGACATTCCACTACAGTCGTGTAACAAAGACACCACCAAGATTCGGCAGTGTCTAACCACGGGATTATTTATGAACGTAGCGGAGCGACAGCATGATGGAACGTACCGCACGGTGTCTCACCACGAGAAGGTGGCGATTCACCCAACCTCCTGCTTGTTCCTGTCTAAGCCTACACACGTCATGTACAATGAGTTAGTGCACACTTCCAAGTGCTACTTGCGCAACTTGTGTGTGGTGGACTCCACCTGGCTGCTGGACGCGGCGCCGGACTATTTCAAACATCACAGGCTACAGAATCAGTTGAGGGCTGTTTCGTCGTGA

Transcript

ENSDKPT00000013542

Protein

Uniprot

Uniprot term	Description
Q80VY9	ATP-dependent RNA helicase DHX33 OS=Mus musculus OX=10090 GN=Dhx33 PE=1 SV=1
Q9H6R0	ATP-dependent RNA helicase DHX33 OS=Homo sapiens OX=9606 GN=DHX33 PE=1 SV=2
F4IE66	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thaliana OX=3702 GN=RID1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0045943	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17820	DHX33; ATP-dependent RNA helicase DHX33	EC:5.6.2.6	Ribosome biogenesis	ko03009	deepkoala