Gene detail

Detailed information of ENSDKPP00000018151.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: CAH3116033.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDKPT00000018151

ATGGCGTCGTCGTTCTTAGAAGACCTTCTCGAGAAAGAAGTCGATGAGAAAGAGGTCAGTGCAATGGTGGGATCGCTGGAAAGCCAGCTGGCGTCGACAACGATCCCCAGCTCCTCTCAGAACCAAGTGAAAGCCCAGGTATCAGCTCCCAAGTCAGATATCAAGCCCACTAATGTCACGATTCAAGCGCCGAAGCAGAGCAGCTCATCTCCGAGTCAGCCAGCAATCATTCGCCCGGCGATCGCTCCATCGGGCAGCACAACAACGGTGATCAACATTGCACCCAGACCAACTGTGACGACTGCAGTTCCGCTCGCCCCTCGGCCAGCTACAATGACGGTTAATTTATCTCAAGCTGGAGGTTTTGTTGGGGCACCAAGATATGTAACGCTGAATCCCAATCAGTTAGTCAACCCCAACTTGATCAACGCGTCACAAATCGCCCTGGCACCTCGGATTGTGTCCGGCGGCTTGAGTATACCGGGTACAGGCCAGGCGATCGCTCCCAGAATCGTTCAACCGATTCAACCACGAGTTGCTGGATTAAATATTGGCGTTTCTCGCCCGCAAGTCGTTATCCAAGGCAGCCCTGCCATGAAGCAGGACGGAAAGGTGATGAAAGTTGGACAGGGTCAAATTCGGCCGCAAATTGTGCAGTCCCAAGGAGTGAACCCCGGGCAGAATGTGCCGATCATAAGGACGTCCCTAGCTCAAATCAGACCTTATGCGGCCATTCCACCGAACTCTTTTCAGCCTGTTCGTCTTGTTGCTCCTACCGCAGACCACGTGAATGTTCCCAGGACGTCTGCCCTGATCACGACATCACACGCTGGGATCACAAACACTGTCGCACTAAACTCGATCTCCCCTGGAACGGCTGCGAATGCAGGACTCAGACAAACTTCAGTTAATTCTGTTAGTCAAGCTCAGAACTCCACTGTTGTGACTTCCGCTCCTCGAGTAGCCATTCCGAGAACGCAGCAGACCTCGGGTCATTCCGCCGCTATAAATTCTCAGGCGCAggttaataaaaataccactGCACAGCTGGAAGCGGTCAAGGAACAGGCTATGAAACTGAATAATTTTTTCAACAACCTCATCAGACTTGCTTCAGAGCAGCGATCACCGGATGTGGGACAGAATGTTAAAGCACTTGTGCAGGGTGTTATGGAGGGAAAGTTAACTGAAGAGGAATTTGCTGCTAAGCTGCAGACAACCTTGAACTCACCGCCTCAACCTAACCTTGTTGGGTTTTTAAAGAAAACTCTTCCAATGCTCCGAGCCCAGGGTCAGACCCAGTCCCCCCTGCAGGCGCTCCAACAGCAGCAGATCCCACAATCCTCCACTCCCCAAAAAATACTCCCACAACAGCAACCCAGTCCTGCTCGTCCAAACAGCGCATCACCACAACCAGCCTTGTTATCTCAAGTCTCCGCAAAACCGCCAAGCACACAGCCACAAAAAGTCCAAATcccacaacagcaacaacaacaacaacaacagcaacaacaacaagtcaGAATACAGCAGAAAATAATGCTGACACCAGCACAGCAACAGCTGATACAGCGCCAGCAACAGCTTGGAAGTCAGAGGATACTGTTGACAGGGACATCATCGGCAGGGCAGCTTGTGTCCACCAGTAGGGGCTTAGTCATGATTTCCCAGCCCAGCACTTCCAGGGTTAACATGACAACTGCTGGTAAGAGTCCATTAGTAGTTGTACCAGCCAATGCTGCAGACAAAGCCAAGCCCAAGTCATTTACTGGAATTAGCAGCAGTGGGGATGATGACATCAATGATGTCACTTCAATGGCAGGTGTCAACCTTATGGAAGAGAGTCAGCGTATTTTAGCAATCAACTCAGAATTACTCAGCAGTCAAACACGGAGCTGCAAGGATGAAAACTATTTAAATGCAGAACCTCTTCGGAAGAGACTGGAATCTTTAGTGCGAAAATACGGTTTGAACGACGTTTCCCAAGACGTGTGCAATATAATATCTCACGCTACGCAAGAAAGACTTCGTAATTTAATGTCGAAATTATCAACTATAAGTCTCCACAGACTCGAAATTTATCGGGATGACCCGCTGAATGAACAGTCAGTAGATATCAAATCGCAGCTCCGTGTGTTTGAACAGATCGATGAAGTGGAACGAAAGAAGCGAGAAGCGAGGGAAAGAGAGGTGTTGATGCGAGCCGCCAAGAGTCGTTCTCGACAAGAGGATCCCGAACAGGCTCGACTTAAAGAGAAGGCAAAACAGCTTCaacaagaggaagaagaaatgCTTCGGAAACGGGCAGCCAACTCCACCGCGTTAGCAGCCATCGGCCCTagaaagaaaataaggaaGTTAGGTGAAGTACTCGAAGGAGCGTCGCCCTCCACACAGGTGATTCTATCTTTCTTATCCTCTTATTCAGGCAATAATTCCTTTCTCGGACAATTGCAAAAACCACAACAACAACAGAGAACGAGAAGGGTAATACTCAAAGATCTAGTTTTCGTCATGGAGCAGGAAAAAGAAACGAGCAAATCGTCGCTGCTGTACAAGGCGCTCCTCAAATAA

Transcript

ENSDKPT00000018151

Protein

Uniprot

Uniprot term	Description
P47825	Transcription initiation factor TFIID subunit 4 OS=Drosophila melanogaster OX=7227 GN=Taf4 PE=1 SV=1
O00268	Transcription initiation factor TFIID subunit 4 OS=Homo sapiens OX=9606 GN=TAF4 PE=1 SV=2
Q92750	Transcription initiation factor TFIID subunit 4B OS=Homo sapiens OX=9606 GN=TAF4B PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12767	SAGA-Tad1	Transcriptional regulator of RNA polII, SAGA, subunit	Family	Interproscan
PF07531	TAFH	NHR1 homology to TAF	Family	Interproscan
PF05236	TAF4	Transcription initiation factor TFIID component TAF4 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024738	Family	Transcriptional coactivator Hfi1/Transcriptional adapter 1	Interproscan
IPR037249	Homologous_superfamily	TAFH/NHR1 domain superfamily	Interproscan
IPR003894	Domain	TAFH/NHR1	Interproscan
IPR045144	Family	Transcription initiation factor TFIID component TAF4	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR007900	Domain	Transcription initiation factor TFIID component TAF4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15138	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0070461	Cellular Component	SAGA-type complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006352	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03129	TAF4; transcription initiation factor TFIID subunit 4	-	Chromosome and associated proteins	ko03036	deepkoala