Gene detail

Detailed information of ENSDKPP00000019133.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: XP_022801523.1, F-box DNA helicase 1-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDKPT00000019133

ATGAGTAATAATTTGGAAGACTATGACGATGTGGATAACTTCAGGAGTCTTCCAGTGGAACTGATGGAAAACATCTTTTGTCAACTGCCCATGGTGGATTTGATGCTCAATTGTGTGCTGGTCTGTCATCAGTGGTACGATGTCATTTCCAATGACAAGTTCATCCCATGGAAGAAGCGTTATTGTCGTCTTAAACACAAGGCAGGAAGAACTGAGGATGAGGTGTTCCAGATGCTGGATCAAGCGTGTCTCCTAGAGGAAGACTTCTTGGTTGTGCATCTGGCAAGATTCATGAAAGAATTCAGGAGAGACAACTCCTCCTTGCTACATTATTTAAAGCAGCATCCAAAGTTTCCATTGATTTCAAAATTCCTTGAGAACCAAAGCATGAGTCAATGCAACCATCAGcAGCAAAGTTGTTGGTCTGCAGTTGGCTTGTTGACTCTGGTGTCATCAACAGTACAAGATGTAACTCAGGTTATCCGCTGCTTGTTGAGCTCATCATTGTGCTTGGTGCAGGAAATCCTGGAGTGCATGTACTGTCTAGCCACTGTGTTCTATGCTCTTCACACTCAGAACAGAATTACTATTGGCCTTCACTACCGTGTGTTTTATGCACTATATCTTTTTGAGAACTCCTTTGCTGCTACACGTGCATCTTTGAGCTCGGCATTTTCACAGAAGCGATCTGGACAACAGTGTATCACAAAGTACAGATGTTCATCAGATCGGATTCGCCTCACGCACGAACAGATCCGTTTAGTCAACCACGATGTGAATCCGGGAGATATTATAAAAATTGTGGCATTTGCTGGTACAGGCAAGACCACCACATTGGTAGAGTTTACCAAGATTAGACCTGAAGTACAATTCCTAAATGTAGCATACAACAAGTCGATACAGCAACACGCGGCTAAAGTATTTCCTGTTAATGTGACATCCCGGACAGTTCACTCATTGGCTTATAGAAGTGTTGGTTACAGATATCGAGCAAAGCTGAAAGGAAGTTTACGGCTGAGCTCCATCATGAATGTGCTTCCTGGAAAGGGTGGATTCCTCCATGCACAAAGGGTTCTGGACACACTTGGCAACTTTATTGCATCAGCGGACCCTTCCGTAAACGCCAGGCACGTACCGCTACGCAACCTGGTCGCCATATCGGCGGGTGATGGTTTGGATGAGCCTGGACCGAGTTACTTCAATAGTCCACAGTACATCCAGCAAGTAGTCGAACACGTGATCATTCTGTGGCAGAAGATGGTGGACCTGAAGGACCATGACGTCAGCATGACACACGACGGATACCTGAAATTATATCAGTTGGAAAAACCTACAATCCACGGCTTTGATTGTCTCTTGATTGATGAGGCTCAGGATTGCACGCCGGCGGCATCGGACATCTTGTTGCGTCAGTCGTGTGCCAAAATCCTGGTGGGAGACCCGAACCAACAGATATATAGCTTCCGTGGTGCCAGGAATGCCATGAGAGAAGTGCAGAGTAGTCACACGTTTTATCTCACCCAGTCCTTTAGATTTGGACCAGAAATCGCGTATGTGGCAGCCTGTACCTTAGACGCACTGAAGGGCATACACGATAAGACCCTTGTAGGAGGTGGCCAACCTGGTGCTGTTTCTGGTGATACCGTTGGCCAGTTAGCTATCATTACTCGGTGTAATTACACTCTGTTCAATGAAGCTGTGAAAGTGTGCTGCGCCAACAACGACACCAGGGTCGCCTTTGCAGGGGGTCTGCAAAGCTACAGTCTTGATCGAGTGCTGGACATATACCGCTTGTTCTCAGCTGACAAGACAAAACTCTTGGAGATACGGGataattttattaaaaaattcCCGTCATTTTCTGCCCTGAGGAAATTTGCGATCGCTGCTCAGGACGCTGAACTTCTTGGCAAAATCAAGATTGTCGAAACACACCATGTCATGACACCTACACGCATAGAGAAGATCAGGAGCAAAACATGCAGGCAAATGGAACAAGCAAAAATCATCTTCTCCACGGCGCATAAAGCCAAAGGCCTTGAATTTGACTCTGTGCGCCTAACTGACGATTTTCTAATGGATGGTGAAGTGCCTTTCCATGAACATCAAGAAGATGAGAAGAACTTGGTTTATGTAGCTGTTACTCGAGCCAAGAAGAGCCTACTGATGACCAGGACTTTGCTGCAAATATTGGCTTCGAGAAAGGAGTACTTTGTCGAGGCTGCTTTACCGAAGCAGGTGTTGCCTGTAAGAACGTCTCTTAAAAACAAGAAACTCGCTCCTCTTCTCGACgATAGGTCCAGCGTTACATGTGTGCAGTGTAAGGTAGAGGAGTTGCTCGATGATAAAAGTCAAATTATTGTTATAAAGGAGCAAATCAAATTGGGAAATGGCGAGACATGTCCTGGAGGGATCCTGTGCTCCTCTTGTGCGCTCAAGACCACGCCTCACTTGAGCTGCCTCATCTGGCCCAGTGTACAgtaa

Transcript

ENSDKPT00000019133

GAACCAGAACTGCCTCATACAGTCAGAAGCGAGAAGTATTTTCACAGCCATGCCTTTGGCGGTGATCGTACTGTGTTCGTGACCGGACCAGTTGATGACGAAGTGTCAGAACAGCAAAACAGAAGACAGACAGGTACAGTAATGAGTAATAATTTGGAAGACTATGACGATGTGGATAACTTCAGGAGTCTTCCAGTGGAACTGATGGAAAACATCTTTTGTCAACTGCCCATGGTGGATTTGATGCTCAATTGTGTGCTGGTCTGTCATCAGTGGTACGATGTCATTTCCAATGACAAGTTCATCCCATGGAAGAAGCGTTATTGTCGTCTTAAACACAAGGCAGGAAGAACTGAGGATGAGGTGTTCCAGATGCTGGATCAAGCGTGTCTCCTAGAGGAAGACTTCTTGGTTGTGCATCTGGCAAGATTCATGAAAGAATTCAGGAGAGACAACTCCTCCTTGCTACATTATTTAAAGCAGCATCCAAAGTTTCCATTGATTTCAAAATTCCTTGAGAACCAAAGCATGAGTCAATGCAACCATCAGcAGCAAAGTTGTTGGTCTGCAGTTGGCTTGTTGACTCTGGTGTCATCAACAGTACAAGATGTAACTCAGGTTATCCGCTGCTTGTTGAGCTCATCATTGTGCTTGGTGCAGGAAATCCTGGAGTGCATGTACTGTCTAGCCACTGTGTTCTATGCTCTTCACACTCAGAACAGAATTACTATTGGCCTTCACTACCGTGTGTTTTATGCACTATATCTTTTTGAGAACTCCTTTGCTGCTACACGTGCATCTTTGAGCTCGGCATTTTCACAGAAGCGATCTGGACAACAGTGTATCACAAAGTACAGATGTTCATCAGATCGGATTCGCCTCACGCACGAACAGATCCGTTTAGTCAACCACGATGTGAATCCGGGAGATATTATAAAAATTGTGGCATTTGCTGGTACAGGCAAGACCACCACATTGGTAGAGTTTACCAAGATTAGACCTGAAGTACAATTCCTAAATGTAGCATACAACAAGTCGATACAGCAACACGCGGCTAAAGTATTTCCTGTTAATGTGACATCCCGGACAGTTCACTCATTGGCTTATAGAAGTGTTGGTTACAGATATCGAGCAAAGCTGAAAGGAAGTTTACGGCTGAGCTCCATCATGAATGTGCTTCCTGGAAAGGGTGGATTCCTCCATGCACAAAGGGTTCTGGACACACTTGGCAACTTTATTGCATCAGCGGACCCTTCCGTAAACGCCAGGCACGTACCGCTACGCAACCTGGTCGCCATATCGGCGGGTGATGGTTTGGATGAGCCTGGACCGAGTTACTTCAATAGTCCACAGTACATCCAGCAAGTAGTCGAACACGTGATCATTCTGTGGCAGAAGATGGTGGACCTGAAGGACCATGACGTCAGCATGACACACGACGGATACCTGAAATTATATCAGTTGGAAAAACCTACAATCCACGGCTTTGATTGTCTCTTGATTGATGAGGCTCAGGATTGCACGCCGGCGGCATCGGACATCTTGTTGCGTCAGTCGTGTGCCAAAATCCTGGTGGGAGACCCGAACCAACAGATATATAGCTTCCGTGGTGCCAGGAATGCCATGAGAGAAGTGCAGAGTAGTCACACGTTTTATCTCACCCAGTCCTTTAGATTTGGACCAGAAATCGCGTATGTGGCAGCCTGTACCTTAGACGCACTGAAGGGCATACACGATAAGACCCTTGTAGGAGGTGGCCAACCTGGTGCTGTTTCTGGTGATACCGTTGGCCAGTTAGCTATCATTACTCGGTGTAATTACACTCTGTTCAATGAAGCTGTGAAAGTGTGCTGCGCCAACAACGACACCAGGGTCGCCTTTGCAGGGGGTCTGCAAAGCTACAGTCTTGATCGAGTGCTGGACATATACCGCTTGTTCTCAGCTGACAAGACAAAACTCTTGGAGATACGGGataattttattaaaaaattcCCGTCATTTTCTGCCCTGAGGAAATTTGCGATCGCTGCTCAGGACGCTGAACTTCTTGGCAAAATCAAGATTGTCGAAACACACCATGTCATGACACCTACACGCATAGAGAAGATCAGGAGCAAAACATGCAGGCAAATGGAACAAGCAAAAATCATCTTCTCCACGGCGCATAAAGCCAAAGGCCTTGAATTTGACTCTGTGCGCCTAACTGACGATTTTCTAATGGATGGTGAAGTGCCTTTCCATGAACATCAAGAAGATGAGAAGAACTTGGTTTATGTAGCTGTTACTCGAGCCAAGAAGAGCCTACTGATGACCAGGACTTTGCTGCAAATATTGGCTTCGAGAAAGGAGTACTTTGTCGAGGCTGCTTTACCGAAGCAGGTGTTGCCTGTAAGAACGTCTCTTAAAAACAAGAAACTCGCTCCTCTTCTCGACgATAGGTCCAGCGTTACATGTGTGCAGTGTAAGGTAGAGGAGTTGCTCGATGATAAAAGTCAAATTATTGTTATAAAGGAGCAAATCAAATTGGGAAATGGCGAGACATGTCCTGGAGGGATCCTGTGCTCCTCTTGTGCGCTCAAGACCACGCCTCACTTGAGCTGCCTCATCTGGCCCAGTGTACAgtaaatcaactaaaagttgGACATTACTTAAGCGAAGTTTTAAATTGATGCTTACAATCATTATACATTTATCTGCCAACAAACATTACCACTTGCGCTCATAAGTAATTGGTACGCAAAatacatagagattacttcatggaaagtgcgcgcgtacggtttttattcacgagttgtgaagtatcataaaacgaacgagcgaggctttgcgagcgagtgagttttatgatacgaaacaacgagtgaataaaaactgtacaaagcactttccatgatgttttctgtttattatatacatactgagacatttatgatgggaccgggaaaccctttaaaagtagtgaaaaatcgtcgttcgcagcttgtgattggacgaacgatttttttcacgtgtgaaaagcgtcgttcgcggcctctcactggctagaactcatttgcgtacgaaattttacgatatggctttttcgtgagtatgtctcagtatgtatataataaatatatttattatatagacacgagtgttttactggaaaatctaccgtgcgtaaaatccacaCGAAACtgcatccgggacccgagtggcgtattttccatatcctcactgtgaggatatcgttggcatcatttcccgcttttgcacggttgtttgtgcaatttctcgtaaaactaACCAGTCTGTATTTCCAACGCCCTCGATTTCGCTGTCCGAACTGCCTGGTCGGCTTTcgagaaattttagattttttagACATTGATATTTTTCGAATTTTTTAAATGTTACAATAAAATCTTAGTGGGTAGTGGGGACGGTTTGAAATCACAGTCTCCAGCCTTCTCATTTTTATCATTGGAGGGGAAGAAAACGATGAAATTCCGTCTAGAGACGCTCTAGCGCCAAAATAACG

Protein

Uniprot

Uniprot term	Description
Q8NFZ0	F-box DNA helicase 1 OS=Homo sapiens OX=9606 GN=FBH1 PE=1 SV=2
Q8K2I9	F-box DNA helicase 1 OS=Mus musculus OX=10090 GN=Fbh1 PE=1 SV=1
F1ND48	F-box DNA helicase 1 OS=Gallus gallus OX=9031 GN=FBH1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13245	AAA_19	AAA domain	Domain	Interproscan
PF13361	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR014017	Domain	UvrD-like DNA helicase, C-terminal	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR000212	Family	DNA helicase, UvrD/REP type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0000725	Biological Process	recombinational repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10300	FBH1, FBXO18; F-box DNA helicase 1	EC:5.6.2.4	Ubiquitin system	ko04121	deepkoala