Gene detail

Detailed information of ENSDKPP00000020572.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: PFX33876.1, 2-hydroxyacyl-CoA lyase 1 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDKPT00000020572

ATGGCGGACGGTGGCACAAGCGATGTGGATTTGGAGGAAGGCGAAGAACTCGATGGTGCTTCGCTGCTTGCCGCGGCTTTGAAAGCTCAGGGAGTGCAGTTCATGTTTGGAGTTGTCGGCATCCCAGTTATCGAAATAGCAGTAGCAGCTCAAGCTGCTGGAATCCGATATGTCGGCATGAGGAACGAGCAGTCAGCCTGTTATGCTGCATCTGCTATTGGTTACTTAACTGGCAGGCCGGGTGTTTGCCTTGTTGTGTCTGGCCCTGGTTTGTTACATGCCTTGGGTGGAATGGCAAATGCTCAAGTTAATGGTTGGCCAGTCTTAGTTGTTGGTGGTTCTTGTGATGTGGATCAAGAGAGCATGGGTGCCTTTCAGGAGTACCCTCAGGTGAGACTActgtcggggggggggggggggggtgtggaGGGGAGCACATCACCTGAAGAGAAGtctcaaattctcccaaacatgATCACAGATGTTGAGGCAGCCAGACCCTACTCAAAGTATTCAGCAAGACCAAGTGGTATTGAACAGATAGGATTCTACGTAGAGAAGGCTGTGCGTAGCAGTATGTATGGCCGTCCTGGTGCTGTCTATCTTGACTTGCCAGGAAATATGATCACAGAGAAGGTGCAGGCCTGTCTACGGCCTATCCCCTGCTGCCAATCACCACCAAAGTCTTTAGCTGATCCCAGCTCAGTGGAAATGGCTCTTACACTATTGCATCAAGCTAAGAGACCGCTTGTGATCATTGGAAAAGGGGCAGCATTTGCTGGAGCTGAGAAGCCGTTACGAGAATTTGTTGAGAGGTGCGGCGTACCTTTCCTGCCAACCCCCATGGGCAAGGGCGTGGTTCCTGATGATCACCCCCTTTGTGTCGCAGCAGCGAGATCAAGAGCGCTGTCCAAGGCCGATGTAATATTTTTACTTGGCGCTCGGCTCAACTGGATCCTTCACTTTGGAAAACCTCCAAGATTCAGAGGCGACGTCAACATTGTACAGGTTGATCTTCATGCCGAAGAAATAGGAAACAATGTCAGCACACGTGTTCCGTTGCTAGGAGACCTGAAGGCTGTTATTACACAGCTCAATGAAGCTCTGAAGAGAAATTCTTGCACCGAACACGTGCGCATGTGTGGGGAGCCCGAGTGGTGGGAGGAACTGGAAGCCAAAGTCAAACTAAACCTAGCAGCCAATCATAAACTTGCAAATGATGAAGAGACAGTACCTATGTCATATTACCAAGTTTATGGACAGaTCAGAAAGTTTTTACCTCGTGACTGTATCATAGTGAACGAGGGACTTTATTGCCTTTGTCTacatgtccgccttagagagagttcagttacagagaaacgagCAGTTAAAATCGttaaTGTTAATCCTTTTTTTCCGCGCAGGCTTGACGCTGGCACATTTGGCACGATGGGAGTTGGAACAGGATTCGCTATTGCCGCTGCTATGTTGTCCCAGAGTCAATCAGATGGCAGCACGCCGGCCAGGAGAGTGGTCTGTATCCAGGGAGACAGTGCGTTTGGCTTCTCAGGGATGGAACTGGAGACTGCTTACAGGGCCCCGCCCACAGCACTTCTACCCAAGGCGAGATACGAAAGAATTATCGAGGCATTTGGAGGAAAAGGTTACTTTGCAGAGACGCCAAGTGCTCTCAAAGAGGCTCTGCGCCACGCGTTTGAAGACACTGAGAAAGGGAAGAAGCCTGTGCTGATTAACGTGATGATCAGCCCGTCTTCAGAGAGGAAACCACAGTGGTCGTCCAATGTTACTGGCAAGATAAATGAACTACTTGAGGCTTTTCAGCTTCGAGATGAAGAATTAAACAAGAAGTATGTCGAACTGGAGAAACAGCGAGCGGCTTTCCAAGAAGAAATGACGAGACGCAAAGAAGACTGTGAGAAAGAGCTAGCGGCGAAACGACTCCAATTGGAGGAAGATTTGATAAAACACGAAGTTGAAAGCAAGAGGATGGACGAAGTTTACGAGTTCCAGTCCTCTCGAGTCAAGTTGGACGTTGGAGGGCAGATCTTCACGACTTCTTTGCAAACGCTGCGGTTAGACGGCGAATCGATGCTAGCCGCCATGTTCTCGGGGCGACACAAGCTTGTCCAGGAGAGTGACGGGAGCTACTTTATCGACAGAGATGGAAGGCACTTTCGACATATCTTGAACTTCCTGCGAGACGGCTTCAATCCGGAGTTGTTGCCTCGCGATGAGAGATCGCTGAAGGAGATTCAACACGAGGGCCATTACTATCAGTTGACGGGTCTTGTCAGCGCGATTGATTCGCTGCTGAACCCTCCGCCACCAGCCCCGGACATGACACAGAAAGAAATTGATGACATGCTCTCTACAATTACTCAGCAATGGCCCAACCCCCCTGTTCTGGGGGGACATCCAACGTTCGTTTGCCAAAGCATGACCAAAGCGCCCCTTGAGTTTACCGGCAAAAATTTGTCTGGGCTTTCCTTTGCACACACAACCTTCGCTCATAATGTTTCTTTCATAGGCACAACTCTAGTCAATGCATGCTTCTATGGCTGCGAGTTCGTCAGCCATGTAGTGGTTGATTTTTCCAATGCTGATGTGTCTGGTGCAGATTTTAGGCAGTGTCGGTGTGTTCAGGGGGGACCTAATGCCTTTGGGAGTCAGAGTGCTAGTGGGAGTATGTTTGGTAGCTCTACATTTGGGAGTGGTGTCATGTTTGGTTCAAGTTGTTCGAGTTTTGCACATCTCATAAAAAGTGGTCACTTGAAGTTCACAGGTGCAAAGCATATTGGGACCAAATTTGATCCAAATATTTTTGAGGTTATTCAGTTTTGA

Transcript

ENSDKPT00000020572

Protein

Uniprot

Uniprot term	Description
Q8CHM7	2-hydroxyacyl-CoA lyase 1 OS=Rattus norvegicus OX=10116 GN=Hacl1 PE=1 SV=1
Q9QXE0	2-hydroxyacyl-CoA lyase 1 OS=Mus musculus OX=10090 GN=Hacl1 PE=1 SV=2
Q9UJ83	2-hydroxyacyl-CoA lyase 1 OS=Homo sapiens OX=9606 GN=HACL1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02776	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan
PF00205	TPP_enzyme_M	Thiamine pyrophosphate enzyme, central domain	Domain	Interproscan
PF02775	TPP_enzyme_C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	Domain	Interproscan
PF02214	BTB_2	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012001	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan
IPR029035	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR012000	Domain	Thiamine pyrophosphate enzyme, central domain	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR045025	Family	TPP-binding domain containing protein HACL1-like	Interproscan
IPR011766	Domain	Thiamine pyrophosphate enzyme, TPP-binding	Interproscan
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR003131	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43710	2-HYDROXYACYL-COA LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030976	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0001561	Biological Process	fatty acid alpha-oxidation	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0051260	Biological Process	protein homooligomerization	Interproscan