Gene detail

Detailed information of ENSDKPP00000025479.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: XP_027043518.1, uncharacterized exonuclease C637.09-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDKPT00000025479

CGcgtccaacatggccgacagACGCGTTGTGGTGCGTGCAAGTGTGTGCTCCGTTATCTCCTACTAGGTTCGTTACCCTACCCAGCATGTTGCAGTTATAGCACTTAGACACCCGACATGGAAGAAAATACAGGAGTTGATTATGAAATCGCGAAAACTGTGCCAAAGAATAAAAAGACTGCTGCAAGAAAAAGACAGAAGAAGCGTAGCAAGCACAGACATTTCCTGGAAAAACTAAGTCAATTAAAGgCACTGCAAGAAAATACAAGAGTTGACCATGAAATTAAGAGTGAGACATCAAAGGATGAACAAAAGGCTATTGCAAACCCAAGAAAAAGAGGAAATGATCAGTTAATTCACCAGTGCAGAGTACTGAAGAGAGTAAAGATTGAAGAGCTGCAGCCAGTAGTGAGGTTAGATAGAATTTTTTCTGGTGATAAGGAGGAAGAAAGACAAAAGCTGGAATTGTCACAAGTGCGACACTTGATACTACATACAGTGCTGAATGAAGAGAAAAGCAGCAGTCCTAAGTGGGTACATCTACCCCACTGGTCAACTGTCAGCAAGGCTGCCCTTGTTCTACTGAGTGGCATCAATGAACAGCTCTATGAAGACAACAAAGAGTGTTTCCCATTAATTTCCGAGCACTTTGGAGTGCATGCTCCAACAAAAGCAGCAGGCTGGAAAACTATGGTCGAGCTGCCACACATAACTCTACTACAGGGTGAAACAAAGTTTAGTGAAAGACAGATATGCCGTTGGAGAAAGATGGACAAGAAAGTGCTTCAAAGACCCCCAGGCAAAGAACACCATGTCCTGACAAGAGATGAAATGTTAGCCAACAGCTTTCCTTTACCagaagacaaagaaaaattgGCACTGGAAGGATATATGTTCATTCAGAACTGTACAGACAACAAGAGACCTATTGAGGAGTCACCAATGTTTGCTATTGATTGTGAAATGTGTGATACGTCAGCAGGGAAGGAGGTGACACGTGTGTCAGTGGTAGATGAGTCCCTGAATGTCCTTCTAGACACTTATGTAAAGCCACACAGAGAGATTATTAACTACCTGACCAGATACAGTGGAATCACCGCGCAACTGCTGGAAGGAGTGAACACAAGGCTTTCAGACGTCCAGGAGCGACTTCGGAACATTTTACCTCCTGATGCTATTCTTCTTGGGCATTCACTTGAAAACGACTTAAGAGCTCTCAAGCTGTACCATGACCGAGTGATTGATACGTCTGTAAGTTACGGCAACGGAAATGTATTCTGCAAAACCGCCCTCAGGAAGCTGGCTTGGAGATTCCTCGGTAAAATTATCCAACAAGGTGATGACGGCCACTCCTCTATTGAAGATGCTCGAACATGCATGCAGCTGGCTCAGTTGAAGATAGAGCCAGGTCCCGATTGTGGTCATGACACATCAGAAGTGTTCTTGCGCCAATTAGAGGAGAAACGTGTACTAGGTCCCAATTTTGGTCATGACACATCAGAAGTGTTCTTGCGCCAATTAGACAGGAAACGCGTAGTAGCTTCCATTCTGGATTGCCCCAGTGTTTTGAAAGACTTCAGCAGCACGGGAAGCCACAACGTACCTTGTACATCTGATGAAGAGGTCGTTTCAAAAATTGAGAAACTGATGGACATATCAGACTTCACCTGGGCTCAACTGCACGGAGCAGAAAACGCGCTGAAAGAGAAATACAGTGTGGAAAGGCCTCTGAGGTCTGCGGATAAAGCTGTAAAGGAAGCGCTCAGAACTCTCGACTCCCATGTTGGTGAGATCGTAAGAAAAGCGCCGATCAACTGTCTTGTTGTGGTGGTGTGTGGATGTGCAGACTTGACAACAGTGAAGAAATTACAAAAACAAGGCCCTTCGTCTAGGGAAGAGCTAATCGAGGCAGTTAGGCAAGCAAAAAATGGAATGTGTTTCATGAAAAGGACTTGGAATCCGAAACTGGTTTTAAATGAGTGGAATCAGTGGAAGAAGTCGATTAAGGTCAAGAGTTTGTGGGAAGAAACTGCGTGCCCTCGGGACAAAACACAGAATCAATGTCATTCTGTAAAACGGGAAAAAGAATAATcacttttttgacaaaaaataaataaataaataaataaattacttTGTTATTGAAAGACACGTTTTGTAAGAGCTTTTATCATAAAAGTGGAAATtaaaatttttgttttatcaTTTGGATCTCCTTTACACCTTCGATTCTATCTTCTCTTGTACGGCTCTCGCGTCTACTACTCTTATCCCTCATAGGAGGAATGCCGGGATATTTGTGCACTTCCAAGAAAGACGAGAGACACCTGGGTACCAAAAAGCGTGAGAAACTGGGAACCAG

Protein

Uniprot

Uniprot term	Description
Q8L7M4	Small RNA degrading nuclease 5 OS=Arabidopsis thaliana OX=3702 GN=SDN5 PE=2 SV=2
Q2T9U5	RNA exonuclease 5 OS=Bos taurus OX=9913 GN=REXO5 PE=2 SV=1
Q96IC2	RNA exonuclease 5 OS=Homo sapiens OX=9606 GN=REXO5 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR034922	Domain	RNA exonuclease 1-like, exonuclease domain	Interproscan
IPR013520	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR047021	Family	RNA exonuclease REXO1/REXO3/REXO4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004527	Molecular Function	exonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14570	REX1, REXO1, REXO5, RNH70; RNA exonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala