Gene detail

Detailed information of ENSDKPP00000031642.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: CAH3157914.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDKPT00000031642

ATGGGACCCACCGTCTTGTGCACTAAGTTCGTGAATTCCACGCTTCTGATCCACGACGAGAAGCCGCATTCTCTGCTGTGTTGTTACGGAGCTGGGATTGACATTTTGTTGAAGATGCAACGACTGTCTGGCTTCACGTTTACCTTGTTTCTTGTCAAGGACGGCAAGTACGGCTCGTACGGTCCCGATGAGCGAAAGATGAACGGAATGATCGGCGACTTAACTAGACGCGAAGCCGACTTGGCAATCGGACTGATAACAATCACCGAAGAGCGCACGAAGTTCGTCGACTTCACGATACCTTTCCGAGAAGCCGCGCTGACATTTCTCGTCAAATCGAACAAGAGGAAGTACTACACTTTTGCTGAGTCCATTGGAGATATGCGTTTGATGAAGCCGTTCAGTATGCAGCTCTGGTTCGCTTGTGTGGCGACGTTTTTCGCGGTGTCGTTGACCGTTTGGTTGATGGAAAAGTTCACGCACTATAGGAAAGTCAAGAGCAGTTATCTGTTGCCCTTTGAGTTCGCTGCTTACGTGTTCGGCAATATTTTTCACGTGTCTTTGACTAAAATCTCGGCCAAGACGTTTGCGGTGccggtggtgatggtgatagcGAACTGTGGGGCATTAGTGTTGGTCAGTTCCTACACAGCCAACTTACTCGTCTCGCTTATCGTACTGGAGGAGAATTCAATTGTGTCAGGTGTGGCGGATGTCAAGTTTACCAGTCCTCCAGAAGGCTTTACGTTCGGCACGGTTAGGGATTCAAGTGTTGAAGGCTTCTTTAAACGGAGCAACAACTCCAACCTGCAGAGAATCTACAACAACATGAAGAACGTTGGTAGCTATTCAGAAGGAATAAAGAAAGTCCAGTCTGGAGAGCTGACAGTATTCATTAGCGATAGCGATGCCTCTCTGTCGGGCGAAGCCTTGGAGCATGGAAGCTGTGGGTTAAAACTGGATGGAAACCGGTTTGATCTGGCAGGCCTCGCTTTCGCGCTGCCAAAGAACTCCACGTGGACGAGCGAGTTCTCGAGAGCCATTCACAAGTTGAACTCTCGGGACGGGATCGACAGGGTGTTCAAGAGATGGATGAAAATCGGGTGCGAGTTGCGAGGCAACCATTCAGCGCATGCATTTAATATGGGTTTGGACGAGTTCGGGGGATTTCTGTTCAACACCTTTTTAATCTGTGTCGGCTGTTTCTTTATTCTGACTTTGGAAATTTTAGTGCACAAGAAAATTACCAGAAATCGTCAGCACTTCAGTTTCTGGAAAGGAACTTCCCTTCTTCTCTCATCTCTGTTTATCTTAATCTATCTGATATTGGCCTATATCTTAGCTGGCCGAATCAAAGCCCTGGTGAAGCTCTTCCAAGTCCCCGCTCATCTAAGCAATACCGCCGCGCAACAAGATGCTTTGCCGAGCACTGGAATGGGCATTAGAGCCCAGGTCACCGCAGCAGACCTGAGTAACCAGGTAGACGTATTCCGTCTGCGCCGACCGGGATTTGAGCATGTCGAGGGAAGCCTGTCACTAGAGTCTCAAAGCAAGCCTGGTTTCTATCTTCGCTACAAAAATTACAAGTTCTACTTGGAAAAAGCCCAACCAACGGGAATGTATGAGAAAGCCGCTACATTCTTAGAACGACATCCCTTAGAAAGCACAGACATCATAGCGTTGGAATTGTTCAACCATCGTGGATGGTTTGTGTGCCACGAAACGCAGCGCCCGTTTAGGCTCCAAGCGAAGAAACTGGGAATGCAAAGCAAAGAATTTCAGAGTGAATGCCTGTTCATGATGGCTGTAGTACAGAAACCAGGAATCAGAAAGAAAGAGTCGGACAATCCAACAAATGCCCATAAACCACAAgGACCAACTTCGATCTATGCGTCTGCACCATTCATTAAAGGATTGTTTCAACCTCAGCTAACGGGTGCAAGCACTAAACTAACACATCAAAACACAAATGGCAACTCTGCTTCATATCAAAGTGAAATGCCAGGGAGGAGCAGCAAAGGACCAACTTCGATCTATGTGTCCGCACCGTTTGTAAAAGGATTGTTTCAACCTCAGCTAACGGATGCAAGGCCCAAGCCAAcatttcaaaatgcaaatagaAATTCTGCTTCATATCAAAGTGAAATGCCAGGGAGGAGCAGCAGCAAAGGACCAACTTCGATCTATGCATCTGCACCGTTTGTAAAAGGATTGTATCAACCTCGGCTAACTGATGCAAGGCCCAAACCAAcatttcaaaatgcaaatggAAACTCTGCTTCACATCAAAATGAAATGCCAGCACCAACTTCGATCTATGCATCCGCACAGTTCGTTAAAAGCTTTCACCCTCAGCAAACCGGTGCTGGGCCCAAAGTAacacttcaaaatacaaatggAAACTCTGTTTCATATCAAAGTGAAATGTCAGGGAAAAACAACAGAGGGCCAACTTCGATCTATGCGTCTGCGCCATTTGTAAAGGGAAATCTCAAACCAGGCATGACATTGACGACGAACACGAAAAACACTGGGGTTCGAGGACACTTCAagccaccacaacaacaaaggcAATCAAAACCAACCAATTTAAAGTTCGCAAGGGTTGGCCAGAGTCTTCAGGTACAAACACGGAAAAACGGTGGATGGAAATATCCCTCGTATAACAATAGAATGAATGCCGACTTAGCCTTACAAGGACATCATCAACAGATGACAGGATTAATTAGGAGGCCACTTTTGCAGCAGTCATTTCTACCtgaccaacaacaacaacaacaacaacaacaacgaaaatgGCAACATCCAGCACAAGTAGCTGCCACATTCGCAAATTCGGCATTTCATCAGCAAAAACATCCCCAGCCGTTCAGACCAATTAATGGCAATAGACAACACTTTACCGCAGGTTTTAATCATCAGGTTCAGTCGAGAAAATATCCACTGACCATCTCTAAACAGCCGTTCCAGAAAAACGGCAAAGCGTTTTCCGCGGGTCCTGCACGTGGTCACTTGGAACAACTCTCGGCCTTTTCTAAGTGTATCAGTTTGAAGTTCTTAAACAAGATAAAAAGACCCATCAAGCTCATGTCCAACATAAAGAAAGAGGGCTATCTCATCACCGCCGACTCCTTCAAGCTCCGCACAGTCTTCAAACATCCCCTGAAACACCACCAGGTTATCTTCTATGCGCATGACGCATATTGGAAGAACAACGAGGTGCTTTTGAATAACAATGACGCCATCTATGTAAAGCCAGAGGTCTGCGACCTGCCGTTCAAGACCGTCGCACTGACTAACAAGGGACAGCTATCTAATAGAGCCATCGAGACAATACGCGAAAAAGACGAGTTAGAAGCCGCCATGGAATCCGCGGCGTCTACTACAGCTTCTCAATGGAGGAAGCACAGCAACATGACGCAATGGAGCCCGTTTGGACTTTGCAGCACTTCTTGCGGACAAGGCGTCCAAAAACGGACCCGCACATGTCGGGAGGGAAAAACCTGCACAGGACCACTGCAGGAGATCAGAGCATGCATTGAAGCGCCCTGCGCTGGTATtccagacaacgatgctgacgccagcatgtcacgctttgcagcgaaatacaacggaacattcctgtatatttctaaatattgtggaaaaaacaaatttccactggtttgccgtggtgtggactcttatttaccacaatttacgtcatcatga

Transcript

ENSDKPT00000031642

Protein

Uniprot

Uniprot term	Description
Q05586	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens OX=9606 GN=GRIN1 PE=1 SV=1
P35439	Glutamate receptor ionotropic, NMDA 1 OS=Rattus norvegicus OX=10116 GN=Grin1 PE=1 SV=1
Q5R1P0	Glutamate receptor ionotropic, NMDA 1 OS=Canis lupus familiaris OX=9615 GN=GRIN1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF05270	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036195	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR007934	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0046373	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan