Gene detail

Detailed information of ENSDKPP00000032310.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: CAH3194337.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSDKPT00000032310

atggcggaaaaATCAAGCTGGTCGGACAAGCTTCCAAAGCATCCGATTTTCAAGGAGCTGGCACCTGAATCAAAAGAATGCAAAGACAGGAGGTCAAAGCAAATCTTCATTGAGAAAGATGGAGAAATATTCTTGTGGGTCtcgtcgaaaaagcagttgttGACCGCCAACTTGAAGAACCTAAAGTTCTATAAGGATGAGCGCGCGCGCAAGTTTCAAACCCTCCTGTGCACAGAAGCTCCTGTCTTCCAAGTTCACACTCTTCAGTTCAGCATCACAGGAAAGTACTTAGCTCTTATTGGAGACAGAGGGGTCATGGTGTTGGATATGCCACAGAGATGGGGCAAGTTTGCTGAATATAACGGAGGGTTGACAACAGTCAATTGCAGGACAGTGTCTCTAGACGAGCGATTCTACACTGCTCACCAAAGCGTAAAGATTCTGGATGCAAAGTGGCACCCAGGGAGTGCAGCAGACATTCAGTTTGTTGTGCTGACATCAGACAATAAGTTGAGAATGTACAACGTGCTGAAGCCATCTGTTTCTGAACAAGTCTTTTCCCTGGGAGATTCCTTTACGTCAACTGCAGAATACAGCAGAAAGTCCATGATCTCCTCATCAAGTTTTGCTGCAGCTTTGGGAGAAACAGCCACTGCATTTGACTTTGCTCCTCTTGTCTCTGTATggcgaaacaaaagaaatcgAGAGACACAGCCTGAACTAGTGCatccaatatttatacttcaAGAAAATGGTGACATTTATTACTTGTTGCATGGTTTATCAAAAAGTTCACAACTGATTGGTCCACTGACAATGCACCCGGCTGCAGAAGACAACTATGGTCAAGACGCCTGCTCTATTCTCTGCCTACACACTCAGCCACCAGTGGTTGTCATGGCAACAGCCAGTGGAAAGATCTACCACTGTATTGTAGTTGAGTCAGAGGACCAGGATTATTTGATGGATGGGACTTTGAGTGAGGAATCATGGAATGCAGCTTGTGATCCTAGAGCTACCTGCAGTCCCCCAGATGTCCTTTACGTACATGAGTGTATAGAGCTGCAACTGTCCTACACTATTGAGAGTCTTGAATCGACTTCAGAGACTAGCAGCGAATCAGAGGGAGCTGAAGAAAGCGAGAATCCTTTCCCCTTAAGGCTGCACAAAGATCCAAGTCTTGCTCTTCAATATCACTGTACACACAACTCAGGTGTTCATAGCATTGTATTACCTTGGGCAAAGAAATTGGAAAGATTCTGTGCAAAAGAAGGATTTGACCCAGAGGAAGCTGCAATTGTCTATCACATGATCTGTACAACCCCAGCTGCCAATAGCCCTCCAGCTCCTGTTCAAGGCTTTTGTAtgataaaagacaaacttctGGGCTCTGCAATTGCCTGTCTCACATCGAACATGGAATGTATGGTCAGAACAGCAAGGTACATACAGACAAAGCCATTATTTTTAAACATATTAGAAGGAGGAAGGAGACCGAGGAGGTGTTATAAAACAGACAGTTACAAGCATTATTTTAACAAAGCTGCCTTTTTCTACAGGAAGATGCTGTCACCCACATGGCATACCCATGCTGGTTCCTTTGAAAATCACATCAAGAGCATTTTGAAGCGTAACACATCAACTCCACTTTTTAGAGCTGAGAAGTCATCAGAAGATCTGTCGCAGCAGGAGTGTTATCAATTTCTCATCCAAGCCCAGCAGGTCCTGAGAAAGGAGTACattcagaaacaaaaccatgcGCAAGAAGAAATCGACAAAAGAATGTCCATTCTGAGAgagcaaaaggaaaaacagcATGAAGACCTGAAGAGATTGAGAAGATCTAGAGAGGAGCTAAAGGAAAAGGCAGAAAGTCTGGCAGAAAAGCTAAATGATATTGATAACAAACACCAGACTCAGTTGCAACGGCTAGAGGCTGTTTTTCATCATATTCAGACAGGGATACCAGTTCTTTCAGATAAAGAGAGGCAAATGAAAAGGGAACTCCATGCCATTTACAAGAAGCTtgatttctttcaagactctCTAATCAAAAGGGAGTATTGGTCAAAACAGTCTAGGAAAAAGCCTGTGACTTCACCAAACATCAATGCAGCACAGCAGAAGAATGTCAAGAATGTCCTGCATGAACAGTGA

Transcript

ENSDKPT00000032310

Protein

Uniprot

Uniprot term	Description
O08658	Nuclear pore complex protein Nup88 OS=Rattus norvegicus OX=10116 GN=Nup88 PE=1 SV=1
Q8CEC0	Nuclear pore complex protein Nup88 OS=Mus musculus OX=10090 GN=Nup88 PE=1 SV=1
A2CEI4	Nucleoporin 88 OS=Danio rerio OX=7955 GN=nup88 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10168	Nup88	Nuclear pore component	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR037700	Family	Nucleoporin NUP88/NUP82	Interproscan
IPR019321	Family	Nucleoporin Nup88	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13257	NUCLEOPORIN NUP84-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000055	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14318	NUP88; nuclear pore complex protein Nup88	-	Messenger RNA biogenesis	ko03019	deepkoala