Detailed information of ENSDKPP00000033351.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: CAB3997281.1, retrotransposon-like family member retr-1 [Paramuricea clavata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6XKE6Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) OX=492095 PE=3 SV=1
Q91DM0Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) OX=492094 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF13975gag-asp_proteasgag-polyprotein putative aspartyl proteaseDomainInterproscan
PF17917RT_RNaseHRNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR021109Homologous_superfamilyAspartic peptidase domain superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041373DomainReverse transcriptase, RNase H-like domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan

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