Gene detail

Detailed information of ENSDKPP00000040303.1 in Plumapathes pennacea

Genomic Location: :...
NR annotation: XP_027051468.1, AP-2 complex subunit mu [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDKPT00000040303

GGGTGGCCTCCCTTGTGCAGAAAAATGGCGGCGTGAAATCTATCAGTTAGAGGTCTCTTCGAATTTACGCCAACAGCTTGCCTGAAACGTCTTTCGAATCAACCGTCTGAAAGAGGATCTTATCCAGCAGGCCGAAAATTTGGTGAATTTCTGACGGCCAGGAACCATGATCGGCGGACTGTTCGTGTATAACCACAAGGGAGAAGTTTTGATTTCGCGAGTGTATCGCGATGATATTGGGAGGAACACAGTTGATGCCTTCCGTGTCAATGTGATCCATGCTAGAGGTCAAGTGCGCTCTCCTGTCACCAACATTGCTAGGACAAGTTTCTTCCATATCAGACAAGGAAATGTGTGGCTGGCCGCAGTGACCAAGCAAAATGTCAACGCAGCAATGGTCTTTGAGTTCCTCAACAGAACGGTGGAAATTATGATGTCGTATTTTGGCAAAGTCACTGAAGAGAGCATTAAGAACAATTTTGTTCTGATATATGAACTTTTAGATGAAATTGCTGACTACGGCTATCCACAAAAAACCGATACAGCCATATTGAAGACGTTTATCACTCAACAAGGCGTCAAGTCTCAGACCAGAGAAGAACAAGCACAAATCACTAGTCAGGTAACAGGGCAGATTGGGTGGAGAAGGGAAGGCATCAAGTATCGCAGAAATGAACTTTTCCTGGATGTGCTGGAATCTGTAAATCTTCTAATGTCCCCACAAGgCCAAGTCCTTAGTGCACATGTGTCAGGCAAAGTTGTCATGAAAAGTTTCCTCTCTGGAATGCCTGAGTGTAAGTTTGGCATGAATGACAAACTTGTGGTGGAAAAACAGGGCAAGTCTTCATCCGAGTCTTCTATGGATTCCCAGAAAAAGAATTCAAGTAAATCAGGGATTGCCATTGATGACTGCACCTTCCATCAGTGTGTGAAGCTATCAAAGTTTGAAACTGATCGTGCCATAAGCTTCATTCCACCAGATGGGGAGTTCGAATTGATGAGGTATCGCACAACCAAGGACATTAGTTTACCATTCAGAGTAATCCCATTGGTTAGGGAAGTAGGTCGATCCAGGATGGAAGTGAAGGTCGTTCTAAAGTCCAATTTTAAGCCGTCCGTTCTGGGGCAGAAAATTGAGataCGTATCCCAACTCCTCCAACAACTGCAGGAGTGCAGGTGGTGTGCATGAAGGGCAAAGCCAAGTACAAGGCCAGTGAAAACGCCATAGTGTGGAAAATCAAGAGGATGGGCGGCATGAAAGAGTCTCAAATCAGTGCTGAAGTGGAGCTGATGGCAGCTAAGGAGACTAAGAAGTGGGCCAGACCTCCAATCTCGCTCAACTTTGAGGTTCCATTCGCGTGCTCCGGACTGAAGGTACGCTACCTGAAAGTGTTTGAGCCCAAACTGAACTACAGCGATCACGACACCATCAAATGGGTCCGCTACATCTCTCGCAGCGGACTTTACGAGACGAGATGCTGAAAAGTAGAAAATTAACGCGTTTTAAATCAACGAATATCTACGTTACTACACATCGTTATTATAGGTAGATGAAAtcgctttttttgtttttgcttattCGACATGCATGAGTTGGTACGAGACTGCCCTCGTTGAATTGTGGGAAACCAGAATTGATAAGCCCATGATCCTGTGCGAGGGTATACGTGTCATGTGTGCGACAACTTCTTACGAGACAGTTTTCCTTTGTCGCTATATTTTCTCAAATAATTACACGAGTATATATTTTCGTGGTCTTTTTTGTATTGCAACTGATTAAGTAGACCGTTAACCTTTTCCAAGTGCAAACTTTATCATTTTGATAACGAGAATTGACCTAATGTCCTAATCCAACATGGCTGACAAGACAATGGTACGAGGCGCACAAAGGCTCGTGGGCTTTCTAttctggtttctgttttccgggctctgattggctcaggAAACGATCTCCGGTTAAATTGTGTCTTCAGTGTCAAAGATCGTTGGTTTGAGAATGGTCGGCGGAGAATTTTATAAATTGCGTCTTAGGCTAACTTGAATTCAAACTGTTTTGATATGTAACTTGTGTATTCTGCAAGGTAATTCTGAGTCTCATCTTTAAATTCTCCCCATTGCTGTGAAATGCAGTGAAGGGAATGatgcagacagacagacatgtACAGACAACGTTTGTTCAATATCTCTTTGTTCAATGTTCTCTGTTATCAATCCGATCAATGGTAATCATGAGCTGTTTTTGCTGCGGATTTCGATTATCAAAGAGATGTGGTTGTTGACTCAGAAACGCATGCTATTTTTCACTATTCTCCCATCTTCATGTTGTTATAAGAGACATACAGATGAGTTTGTCGAAGAGTTGAACTTGGCGTTTGTCGCCAGCCACGCTCTACAGAATTACAGCGGGAGATGATCAAAGTCAGTTTCGGTAAGACGGTGTTGGCCTCTTCGCACAAAAATAGTTACTTTGGGGCAGTCAGC

Protein

Uniprot

Uniprot term	Description
Q5ZMP6	AP-2 complex subunit mu OS=Gallus gallus OX=9031 GN=AP2M1 PE=2 SV=1
Q3ZC13	AP-2 complex subunit mu OS=Bos taurus OX=9913 GN=AP2M1 PE=1 SV=1
Q96CW1	AP-2 complex subunit mu OS=Homo sapiens OX=9606 GN=AP2M1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01217	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan
PF00928	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018240	Conserved_site	Clathrin adaptor, mu subunit, conserved site	Interproscan
IPR043532	Domain	AP-2 complex subunit mu, N-terminal	Interproscan
IPR001392	Family	Clathrin adaptor, mu subunit	Interproscan
IPR036168	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR028565	Domain	Mu homology domain	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR050431	Family	Adaptor complexes medium subunit	Interproscan
IPR022775	Domain	AP complex, mu/sigma subunit	Interproscan
IPR043512	Domain	Mu2, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131	Cellular Component	clathrin adaptor complex	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0030122	Cellular Component	AP-2 adaptor complex	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0035615	Molecular Function	clathrin adaptor activity	Interproscan
GO:0072583	Biological Process	clathrin-dependent endocytosis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11826	AP2M1; AP-2 complex subunit mu-1	-	Membrane trafficking	ko04131	deepkoala