Gene detail

Detailed information of ENSDLIP00000000888.1 in Diadumene lineata

Genomic Location: :...
NR annotation: KXJ16975.1, Protein alan shepard [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSDLIT00000001137

GACTGAAAGCATGAAGACGGCCGTGTTGCACTGTAGCATCTATTAGAAATAACACGCTTGCGTATGATGAACGAAAGCCCAATTTCCAATCGTTCGCCTTCTACAATGACAACAGACCGAGTTACTGCATCAAGCGAGCGAACCCATACTAAGGAAAATGACACCCATCGTAGTACGGACGAAGCTGGAGGTCCAACCACTACTACAGATCATGATACCAATAGAATCACAACACAGGCTGATGCAAACGATGCTGACAATAAAATCAAGAATCTACAAGACAAGGACATCGATAAAAAGCAAGTACAACTAAAACAGCagcaaaacaagaaaaaaattccaaGCATTCTACCAAGACAGACAAAGTCCCCAGTACATAGTAGTCGTGCAACAGGACGTACCAATCCACAAAACCCTCTGCCAACTTGGCCAGTTACTGCTTATCCACAAACTTGGCATTTCCAAGGAATAAGAGCAGCCCAGTTTCATGCACCGGCACCAATGTATCCAGGCTATCCACAAAGTAGTGTTTATTCTGTACCATCGTCCAATTCACCTGGCTTAAGCAGTAGAGGGTCTAGCGATAGAGGTGATACTCAAGGCACAGTCGATGGAGAGGAAAAACTAAGCAGAACAAATCTATACATTAGAGGTCTTAAAGCAAATACTACAGATGAAGATTTAGTGAGACTATGTCACAAATATGGAGCAATTATATCAACTAAAGCTATTTTAGACAAAGATACTAATTTATGTAAAGGGTATGGCTTTGTTGATTTCGAGAGTCCTGCAGCGGCTCAAAAAGCTGTCCAGGCATTAGTTAGTCGAGGTATCCAAGCACAAATGGCAAAGCAACAAGAACAAGACCCTACAAATTTATACATTCAGAATCTTCCTCCACACTATGATGAAGCTATGTTGGAAAATATGTTTAGCAAGTATGGAAAGGTGATTTCAACCAGAATACTACGGGATAAAGATACCAATAGCAAAGGTGTTGGTTTTGCAAGAATGGAGAGTTCAGAAAAGTGTGAACAAGTCATTAGAGATTTCAACAAAAAGACATTGCCTGGTTGTATTCAAGAATTAGTTGTGAAGTTTGCTGATGGTGGACCCAAGAAAAGACAACCTGATCAACCATGGCAACAATCTCGACCCGAGGGAGGGATACAAGTTGGAGGATATGAGTCTATGGTATTACAGAATGGAGGTGCAAGAGTGATATCTACACATGGTTCTGCCATTCCTAGTCAGGGTGCTTATGTCCAAGGTGTACATCTTCCTGCTTACCAATTACCAACAGGTGGTAACTGGGTTACCCCACAGCACTATCTACAGATGCAAGCACAGCTTCCTCATGGTCAGATAGCTGTAAGTCCTGGGGCTATGGAACATAATGCTGCAGTTCATCAAAGTgctttagccaatcagatgaATCAAATGCACATATCAGCAGGATCACAGTATGTTACTAGTCCTGTACAAAGCTCTTTTCCTCAAAGCTCTTGGCAGGTTGTACAGCACTCAGGTGGAGGAGGAGCTCAAGGACATCACCATACACAACACTATGTAGGAATGGAGGACACCATGATAAGCAGTGACGTTAGTGATCATCGCCCTCCCTTATCACCTCAGGCAGGAGTCCACCAACAGATGCCGACAGCAGAACAAGGACTAGATGAACAACAAATGGCGGCTTATTCAGCTGCTTATCAACAAAGATGGCAGCTTGATCCTGCACCAAGataaaatattgaaatgatCAGTCTCGCAATTCTAGATggtttgtaataattattgtccAAATGTTGTAATGCTCAACGGGTCAGTGTTAACAGTTGGTATGTGTGTTTTAGCGTAGTTTTACATAATCATAATTCCTTAAAACTAGATTTTCAAAACATGCGAGTTGAAAGAGATTAGAGTTAGGTTTTAGCTAGTTTTAGTTCTTTAGTAGaagattttaagcaatttctTTTAAGGTTAtgaaataatttgtaaaacgTAGAGAAAATCTCTTAAAAgtgattatttgttgttgttagaaAGAATTTTCCTCAGCGTTTCTTCGAACATCACTTATCTCAAAGTTCCTTTACCtttacattgtaattttgaaaactatatCATGATATATTGCGTGACACTCAAAGGCAGAAGTCACGAACAGCACAATGTGTTACTAAAATAATGTGCTATGAGTTGACTGCAGTTTGGGTTGATAACCCGGCACCACAATTTCaaactaaaattaatatttcttACATCTAACCAAAGAAAACTTGCTTAATGACTATCCTTTGTGTTGATTGATCGTGTTTAGTGAGTCCTAAGCTTGAACAAACTGAAGGTACTTTAGagataaatgaaatgaatataatCCAACATTTTGCCATTAGTCCTGACTGCATCTTTTACACATAGAACTGTCTATCCTTATACTACATGCGTTATACACAgctattatattttttgaaattttttgaaTTCACTGAAAAGTCGTATTTTGAGATAATCATTATATCAACCGATTTGAGATATGGAAACCACTGAACAAATGGTAAACGTTTGCATGTATAAAAAGCCGGTTTAATGATAGTATGTTATGAGAAGTTTCAGTCCATATTTCAAATCGgcgaataaaaaaataccaatgCAGGCAGCCCAGTTATTATATACAGTACTCTGGATGTCCAATATGGAACTAAGGTCGtcatacaaacaaattatttatctattagGACT

Protein

Uniprot

Uniprot term	Description
Q8MSV2	Protein alan shepard OS=Drosophila melanogaster OX=7227 GN=shep PE=1 SV=2
B4MM23	Protein alan shepard OS=Drosophila willistoni OX=7260 GN=shep PE=3 SV=2
B4HUE4	Protein alan shepard OS=Drosophila sechellia OX=7238 GN=shep PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002343	Family	Paraneoplastic encephalomyelitis antigen	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050441	Family	RNA-binding motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0048026	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24990	RBMS; RNA-binding motif, single-stranded-interacting protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala