Gene detail

Detailed information of ENSDLIP00000001122.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020892846.1, glycine--tRNA ligase [Exaiptasia diaphana]
Species abbreviation DLINE · all data for this species · gene families

Sequence

CDS

ENSDLIT00000001447

ATGAATCgattgtttttgtgttgtctGAGAATTTCAAAATCTCTTACTTCTAAAACAAATACAGTACATCTACAGCATAATCTTAGGGGCATCTCTGTGCATTTTCATCCGTGCTTGGCATCGTTTTCatcagaaaatatttttttaaagaaccATTTTTGTACAACTCCACACAAAAATCTTGTGCAAGTGGCAACGATGGCTGGAAAGGGCGAAGATGTTCTAGCAAGTCTACGAAAATCAGTCAAAGAACAGGGTGATTTAGTAAGAAAACTCAAAGAACAAAATGCTCCTACAAATGATGTTGAAGTTGCTGTAAAAGAGTTGAAAGCAAGAAAGAAAACTTTAGAAAGAACAGAAAAAGAATTGGCACCACAAGATGAGAACTTTGACAGGGCAAAACTAGAAGATTTGCTAAAAAGAAGGTTTTTCTTTGTTCCttcttttgaaatatatgGAGGTGTGGCTGGTTTATATGACTATGGTCCATCAGGATGTGCTATGGAATCGAACATGCTTCAGCTGTGGAGGTCTCATTTTGTATTAGAAGAACATATGCTGGAAATAAGAGCTGCTTTGCTGACACCTCACACTGTTTTGAAGGCATCAGGTCATGTTGAACGTTTTGCTGACTACATGGTTAAAGATGTAAAAACTGGTGATTGTTATAGAGCTGATCATATCTTGGAAGGTCATATAGAGAAATTGATAGCTGACAAGAAACTAACAGCAGAAAAGAAAGCAGAATACCAGAGTGTTCTAAACAAGCTTGACAATTACAATATGCAAGAACTAGGTGAACTCATCAAGAAATATGAAGTCAAAGCTGTGTTGACTGGCAATGATTTGTCAGATCCAACAGAATTCAATCTTATGTTTTCAACTTCCATAGGACCAAGTGGACTCATTCCtggTTTTCTAAGACCAGAAACAGCTCAAGGCATCTTTGTCAATTTCAAACGTCTTCTTGATGCAAATAATGGCAGACTTCCATTTGCTGCTGCTCAAATTGGACCAGCATTTAGAAATGAAATCTCACCAAGATCTGGCCTTCTTAGAGTCAGaGAATTTACCTTGGCTGAGATTGAACACTTTGTTGATCCAACTGACAAGAGCCATCCAAAGTTTGATAATGTTACTGATCTCAAAGTTAATCTTTATCCAGCAAAGAACCAGATGGATGGTGAACCAACTATGGAAATAACTTTAGGGGAAGCAGTGAACAGGAAAATCATCAGCAGTACAACAGTTGCGTACTTTATTGGCCGTGTCTGGTTGTTCCTTACTAAGTGTGGTGCTGATCAAACTAAACTGAGATTTAGACAACACATGTCCAATGAAATGGCCCATTATGCATGCGACTGTTGGGATGGCGAACTAAGAACTTCATATGGCTGGATCGAATGTGTCGGCATTGCTGACCGTGCATGTTTTGATTTGACCCAACACACAAATGCCACTGGAGATAAACTGGTTGCACAGGTCGATCTTCCAGAACCTATTAAAGTCGATGTTCTTGAAGTCGTTCCAGAGAAACCAGCTCTTGGTAAGGCGTTCAAGAAAGAAGCTAAAGTAGTCATGGAGGCATTGGCCAAGTTTGACAGTGACAGTGCAGCCAAGATGGAGAATGACTTCAATCAAAAAGGAGAGCACACAATTAAATTGAATGGCAAAGACTACACCATCCAAAAAGCAATGATTAAAGAAATAAGACGGTACCAGAAAGATGTTCACGTTCGTGACGTCGAGCCTCATGTCATTGAGCCGTCGTTTGGTATTGGTCGGATCATGTACTCTGTGCTTGaacacaactttaaaatacGTGAAGGAGATGAACAACGAACGTGGCTGTCGCTTCCACCAGGTGTAGCTCCGGTCAAGTGTTCAGTTCTTCCTCTCAGCAGACAAAAAGAGTTTGAGCCATTTGTCAAGCAACTATCTATCGCTTTGACCGACCTGGATATATCACACAAAGTGGATGACTCGAGTGGTTCTATAGGAAGACGTTATGCGAGAACAGATGAAATAGCAATACCATTTGGTATTACTGTAGACTTTGACACCGTGAATAAAGAGCCACATACAGCTACGATGAGAGAAAGAAATACGACACGGCAAATCAGAGCCGAGGTCAATGTGCTCCCACAGCTTGTTAGTGATTTAGTACGTGGAAAAACAGCATGGGAAGAAGTTGAGAAGACGTATGGCCTTTTCGAAGGTCAAACAACCAGCAAATAA

Transcript

ENSDLIT00000001447

CATAACCGGTTTCTCCTcgtgtaattttttttcgaatcaATGTGAATGAATCgattgtttttgtgttgtctGAGAATTTCAAAATCTCTTACTTCTAAAACAAATACAGTACATCTACAGCATAATCTTAGGGGCATCTCTGTGCATTTTCATCCGTGCTTGGCATCGTTTTCatcagaaaatatttttttaaagaaccATTTTTGTACAACTCCACACAAAAATCTTGTGCAAGTGGCAACGATGGCTGGAAAGGGCGAAGATGTTCTAGCAAGTCTACGAAAATCAGTCAAAGAACAGGGTGATTTAGTAAGAAAACTCAAAGAACAAAATGCTCCTACAAATGATGTTGAAGTTGCTGTAAAAGAGTTGAAAGCAAGAAAGAAAACTTTAGAAAGAACAGAAAAAGAATTGGCACCACAAGATGAGAACTTTGACAGGGCAAAACTAGAAGATTTGCTAAAAAGAAGGTTTTTCTTTGTTCCttcttttgaaatatatgGAGGTGTGGCTGGTTTATATGACTATGGTCCATCAGGATGTGCTATGGAATCGAACATGCTTCAGCTGTGGAGGTCTCATTTTGTATTAGAAGAACATATGCTGGAAATAAGAGCTGCTTTGCTGACACCTCACACTGTTTTGAAGGCATCAGGTCATGTTGAACGTTTTGCTGACTACATGGTTAAAGATGTAAAAACTGGTGATTGTTATAGAGCTGATCATATCTTGGAAGGTCATATAGAGAAATTGATAGCTGACAAGAAACTAACAGCAGAAAAGAAAGCAGAATACCAGAGTGTTCTAAACAAGCTTGACAATTACAATATGCAAGAACTAGGTGAACTCATCAAGAAATATGAAGTCAAAGCTGTGTTGACTGGCAATGATTTGTCAGATCCAACAGAATTCAATCTTATGTTTTCAACTTCCATAGGACCAAGTGGACTCATTCCtggTTTTCTAAGACCAGAAACAGCTCAAGGCATCTTTGTCAATTTCAAACGTCTTCTTGATGCAAATAATGGCAGACTTCCATTTGCTGCTGCTCAAATTGGACCAGCATTTAGAAATGAAATCTCACCAAGATCTGGCCTTCTTAGAGTCAGaGAATTTACCTTGGCTGAGATTGAACACTTTGTTGATCCAACTGACAAGAGCCATCCAAAGTTTGATAATGTTACTGATCTCAAAGTTAATCTTTATCCAGCAAAGAACCAGATGGATGGTGAACCAACTATGGAAATAACTTTAGGGGAAGCAGTGAACAGGAAAATCATCAGCAGTACAACAGTTGCGTACTTTATTGGCCGTGTCTGGTTGTTCCTTACTAAGTGTGGTGCTGATCAAACTAAACTGAGATTTAGACAACACATGTCCAATGAAATGGCCCATTATGCATGCGACTGTTGGGATGGCGAACTAAGAACTTCATATGGCTGGATCGAATGTGTCGGCATTGCTGACCGTGCATGTTTTGATTTGACCCAACACACAAATGCCACTGGAGATAAACTGGTTGCACAGGTCGATCTTCCAGAACCTATTAAAGTCGATGTTCTTGAAGTCGTTCCAGAGAAACCAGCTCTTGGTAAGGCGTTCAAGAAAGAAGCTAAAGTAGTCATGGAGGCATTGGCCAAGTTTGACAGTGACAGTGCAGCCAAGATGGAGAATGACTTCAATCAAAAAGGAGAGCACACAATTAAATTGAATGGCAAAGACTACACCATCCAAAAAGCAATGATTAAAGAAATAAGACGGTACCAGAAAGATGTTCACGTTCGTGACGTCGAGCCTCATGTCATTGAGCCGTCGTTTGGTATTGGTCGGATCATGTACTCTGTGCTTGaacacaactttaaaatacGTGAAGGAGATGAACAACGAACGTGGCTGTCGCTTCCACCAGGTGTAGCTCCGGTCAAGTGTTCAGTTCTTCCTCTCAGCAGACAAAAAGAGTTTGAGCCATTTGTCAAGCAACTATCTATCGCTTTGACCGACCTGGATATATCACACAAAGTGGATGACTCGAGTGGTTCTATAGGAAGACGTTATGCGAGAACAGATGAAATAGCAATACCATTTGGTATTACTGTAGACTTTGACACCGTGAATAAAGAGCCACATACAGCTACGATGAGAGAAAGAAATACGACACGGCAAATCAGAGCCGAGGTCAATGTGCTCCCACAGCTTGTTAGTGATTTAGTACGTGGAAAAACAGCATGGGAAGAAGTTGAGAAGACGTATGGCCTTTTCGAAGGTCAAACAACCAGCAAATAAAGCCATATACTAAGAATCCAATAcaatgttaaaattaaaacgaGTTTTTAagatcaataaataatgaaagagATCACCAAAAAGCTAAGCGCATGGATGAGAAATCAAAACAGTTCCTTTCGCCCCtaattacagctaaaatcgttgcatcgcGACCGGGagcctttgcaactttgactggattttgtttttttctgcgaCATTAACCGTCGATCCACCGAGGCAACATCATTGATgtcccagaaaaaaaaatccagtcaaagttaCAAAGAAATCCGGTCgcgatgcaacgattttagctgtaattaGGGGCGAAAGGAACTGTTTTGAACTGATATGTAGATTGAATTTCAACTTGATAGGTTCACAGCGGTACGTACTTTACCTCAAGCCAAGTAACTTTTGTTACCATCCCTTGTTTTAGTCGAATGATGTTGTTAACTTTACACCTACAACATGAACTCATTGCATGGATTTTATCCATGACTGAGCTAACTGATGAAAATTGGCCAACAATgatgtcgttttgtttcttgtcaAAGCTTAAGGTTCTGTGAGTGTGATCATTTGAAGAAATGAATTGGTATTCTTTAATGTTTTCATAAGGCCTAAGAGCAATCAATCGCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41250	Glycine--tRNA ligase OS=Homo sapiens OX=9606 GN=GARS1 PE=1 SV=3
Q5RBL1	Glycine--tRNA ligase OS=Pongo abelii OX=9601 GN=GARS1 PE=2 SV=1
Q9CZD3	Glycine--tRNA ligase OS=Mus musculus OX=10090 GN=Gars1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004597 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00458 all species →	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan
PF03129 all species →	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan
PF00587 all species →	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR033731 all species →	Domain	Glycyl-tRNA synthetase-like core domain	Interproscan
IPR000738 all species →	Domain	WHEP-TRS domain	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR004154 all species →	Domain	Anticodon-binding	Interproscan
IPR002315 all species →	Family	Glycyl-tRNA synthetase	Interproscan
IPR027031 all species →	Family	Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2	Interproscan
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR002314 all species →	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10745 all species →	GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004820 all species →	Molecular Function	glycine-tRNA ligase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006426 all species →	Biological Process	glycyl-tRNA aminoacylation	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0070150 all species →	Biological Process	mitochondrial glycyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01880	GARS, glyS1; glycyl-tRNA synthetase	EC:6.1.1.14	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.