Gene detail

Detailed information of ENSDLIP00000004919.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_015780003.1, PREDICTED: volume-regulated anion channel subunit LRRC8A-like [Acropora digitifera]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000005362

ATGTTTTCAATAGACCAACTTGATAAATTCAAAGGAAGTAATCCATCGCTACAGATGCTTAAACCATGGTGGGATGTGTTCACCGATTACCTTAGTATTGGAATGGTGCTTGTCTCAGTATTAGCAGGGGCAATGCAAGCATCTAAAGGCAACCTTTACTGTCTCCCTACTTTTGATTGCAACTCTGCAATGTTAAATCAAAGCATGTCAGCATTTGGAATTGCTATCGACTGTAAAGTTTCTTCGTTAAAGGCAAATCATTCAAGCCTACCCACCACAACAGTCTTGTTAAAACTACAAAGTCAAGGCCAGTACGATTTTGTCAATTCAGAGTGCAGTTACACTGCAGTTCATTGGTTTGCATCatacttttcatttattattttccttgAATCTGTACTACTCACTGTAGCTAATCACCTCTGTCTTAAACTGCCAATGTCACTATCAATAATGGAACATTTTGTTTCTATGGTTACTGAGGGCAATAGCATTTCTGGAAAAAATTTACATGTGTGTAATACACTTTGGGATACAGACCACGCTAATTACTACAACATTGACATGTCAGAGCAGCAAAACCGAAATCGATCGGCAGCAGCATCGCTTGACACGGTAGAACCAAACAAAGCTAGAAGTTTACAGGAAAAAGTGCAAAAGTTCCAAGATACtcagaagaaaagagaagagaaagcCGGTTTTGTGAGAAAGTTCAGatggatttattttattcagtcATTTCTAAAGTGtgtattatttgttgttttagttgttATCAATTCTATCTATTTCAGCAACTTAGAAATGACTGTGAAATGCAAAGTTGACTATTTCATGGCCGAAAAAACTGCAAACTTCAAGTGTTTGAATGTTCTGATTCCCTTTTTTATCGGGGTGTTTTGGATATTACTACTTCTCGTTATTGCTCATGGTATACTGGCTGTCGGTACTTTGATTTGGACAtgcagaaaaatatattacaataaatatgaCTTTAGTATGAATCAGGAAGATAACGAGGCAGTGCAACATGGTGAAATAGACCCTGTGACGGGGGATACATCTTTCCTATTTCACCTTTTGGATAAGTATAACAAGTTGTACTCAAACAGATTTGccatattttttacaaaaacgaacgaagaaaagcttagAACATACATTCTTGCTAAGGATTGGCCCGTAGAAAGATTGGAAAGGTTTTCTACTGACTGTGGACACACGTTGAAGCTTCCCGGAAAATTATGTGGTATCCCAAAGACCGTATTTGAAATGACAAACTTGCATGTAATTGAATTACGTGCATTCAAGAAATTACCAGATTCTGACTTTGATCATGAAGGCTGGAAAGAACTTTGCAATTTACGAACTTTGAAAATCATAAGCTGTCATCTTTATAAAATACCTGTaggaattttcaaaattaaaactttagAGCGTTTGGATTTGTCTGACAACCAAATAGAGTGCATCCCTGAAGACATACAGAAACTTAAAGAGTTAAAGATGTTGAACATGTGTAAAAACAATGTTTCAGAAGGTGTGCAACACTTGATTGCTATGAAGGACTTAACAATAGCCCTTACTGGAAATCCTTATCTGGAGTTGGATCGGTTCTGTAGTGACAGAAAGCAAATGAAGTGCAACAAAGTATACATCgatgaacaaaatattactCCTCAAGCAAAATGTTCTCTTGGCGATAGTATTTGCTTTGATAACGCCTGTTTATATATTGATCCTATTGATGTAGTGAAGTACTCACGAGACCAATATCCAGAGGTTGAACAAGAAAGAAGAACAGCTGAGAATGTCTATCATATGACATCCTACCCGAAAGGACTAGCTTTGGTAATCAAGCTTGAATATACATCTACTCCGCCTGTTGACCGTAAAAATGAAGCCCCATTGGAAAAGCATTTACAACAAATTGGATATAAGTGCTACGACAAATACATGGAGCGAGACAAACGGCTGCGTTCTATAAATACCGagaatgtttttaaacaaCTTCTATCACGTTTGTTAAAGGATCATCAGCCACTTGATTCCCTTGTGATAGTTTGGTTGGGATGTTGTACCCAAGAAGGATTGATTCTTGAAGATAAACAAACCATTATTACTGTTAAGAGAATAACTGAAATACTAAATGGATTTGCTAACTTGGCAGGCAAACCAAAGCTTCTCTATATCCAGGCATGTTTGCATGAATCTCATGACCATATAGTCCATATCAAGGCGACATCGCAGCATTCtttgacagacagacaactGCTCTTTCCAGACTCcacaacaaagaaagaaataatgcCGACTGAAATGAACGTTATTCTAGATCAGGAAAGTCTCCCATACTACAAATTAAAAGTAGACAGACCAGCTTGTGATGATGTAGTTATTGCCGTTTCCACTCTTCAAAGTCATTATTCTCTTGTAAGTCATAGACCATTTTGGTGTGTTAAGGCTCTTGTTGAAATATTCTCAGAGTTTGCATGCAAAGAAGATGTTGTCAGTATGTTAGGATTTGTTAACTGTGAATTGTCAAGGAAATGCATTTCGAAGAAAAACTATAAGCATATCTATCGAATAGAGAGCACACTTACCAAGAAATGGTACCTCTTTCCTGGATATTATGAACCTCGTGAGGATGTGCTTCATGaaacaaatatgtaa

Transcript

ENSDLIT00000005362

TTAATTGATCTTCATCATTTTTCTTGGTTGAGTTTATTCAGTATATTCATTGCTGTGTGTTGGGAGACATACAACAAGGTTTTGTCGACGGAACAGTTTAATCCATGGCTAAACTATGTGAGTTTCTTTCTTGACAATCCACCAATATTTCAACGGTGTCTCTTCTGAAATGCTGAGTTTATAAAGATTGTTTATAGTGCATTTTCAAGATGTTTTCAATAGACCAACTTGATAAATTCAAAGGAAGTAATCCATCGCTACAGATGCTTAAACCATGGTGGGATGTGTTCACCGATTACCTTAGTATTGGAATGGTGCTTGTCTCAGTATTAGCAGGGGCAATGCAAGCATCTAAAGGCAACCTTTACTGTCTCCCTACTTTTGATTGCAACTCTGCAATGTTAAATCAAAGCATGTCAGCATTTGGAATTGCTATCGACTGTAAAGTTTCTTCGTTAAAGGCAAATCATTCAAGCCTACCCACCACAACAGTCTTGTTAAAACTACAAAGTCAAGGCCAGTACGATTTTGTCAATTCAGAGTGCAGTTACACTGCAGTTCATTGGTTTGCATCatacttttcatttattattttccttgAATCTGTACTACTCACTGTAGCTAATCACCTCTGTCTTAAACTGCCAATGTCACTATCAATAATGGAACATTTTGTTTCTATGGTTACTGAGGGCAATAGCATTTCTGGAAAAAATTTACATGTGTGTAATACACTTTGGGATACAGACCACGCTAATTACTACAACATTGACATGTCAGAGCAGCAAAACCGAAATCGATCGGCAGCAGCATCGCTTGACACGGTAGAACCAAACAAAGCTAGAAGTTTACAGGAAAAAGTGCAAAAGTTCCAAGATACtcagaagaaaagagaagagaaagcCGGTTTTGTGAGAAAGTTCAGatggatttattttattcagtcATTTCTAAAGTGtgtattatttgttgttttagttgttATCAATTCTATCTATTTCAGCAACTTAGAAATGACTGTGAAATGCAAAGTTGACTATTTCATGGCCGAAAAAACTGCAAACTTCAAGTGTTTGAATGTTCTGATTCCCTTTTTTATCGGGGTGTTTTGGATATTACTACTTCTCGTTATTGCTCATGGTATACTGGCTGTCGGTACTTTGATTTGGACAtgcagaaaaatatattacaataaatatgaCTTTAGTATGAATCAGGAAGATAACGAGGCAGTGCAACATGGTGAAATAGACCCTGTGACGGGGGATACATCTTTCCTATTTCACCTTTTGGATAAGTATAACAAGTTGTACTCAAACAGATTTGccatattttttacaaaaacgaacgaagaaaagcttagAACATACATTCTTGCTAAGGATTGGCCCGTAGAAAGATTGGAAAGGTTTTCTACTGACTGTGGACACACGTTGAAGCTTCCCGGAAAATTATGTGGTATCCCAAAGACCGTATTTGAAATGACAAACTTGCATGTAATTGAATTACGTGCATTCAAGAAATTACCAGATTCTGACTTTGATCATGAAGGCTGGAAAGAACTTTGCAATTTACGAACTTTGAAAATCATAAGCTGTCATCTTTATAAAATACCTGTaggaattttcaaaattaaaactttagAGCGTTTGGATTTGTCTGACAACCAAATAGAGTGCATCCCTGAAGACATACAGAAACTTAAAGAGTTAAAGATGTTGAACATGTGTAAAAACAATGTTTCAGAAGGTGTGCAACACTTGATTGCTATGAAGGACTTAACAATAGCCCTTACTGGAAATCCTTATCTGGAGTTGGATCGGTTCTGTAGTGACAGAAAGCAAATGAAGTGCAACAAAGTATACATCgatgaacaaaatattactCCTCAAGCAAAATGTTCTCTTGGCGATAGTATTTGCTTTGATAACGCCTGTTTATATATTGATCCTATTGATGTAGTGAAGTACTCACGAGACCAATATCCAGAGGTTGAACAAGAAAGAAGAACAGCTGAGAATGTCTATCATATGACATCCTACCCGAAAGGACTAGCTTTGGTAATCAAGCTTGAATATACATCTACTCCGCCTGTTGACCGTAAAAATGAAGCCCCATTGGAAAAGCATTTACAACAAATTGGATATAAGTGCTACGACAAATACATGGAGCGAGACAAACGGCTGCGTTCTATAAATACCGagaatgtttttaaacaaCTTCTATCACGTTTGTTAAAGGATCATCAGCCACTTGATTCCCTTGTGATAGTTTGGTTGGGATGTTGTACCCAAGAAGGATTGATTCTTGAAGATAAACAAACCATTATTACTGTTAAGAGAATAACTGAAATACTAAATGGATTTGCTAACTTGGCAGGCAAACCAAAGCTTCTCTATATCCAGGCATGTTTGCATGAATCTCATGACCATATAGTCCATATCAAGGCGACATCGCAGCATTCtttgacagacagacaactGCTCTTTCCAGACTCcacaacaaagaaagaaataatgcCGACTGAAATGAACGTTATTCTAGATCAGGAAAGTCTCCCATACTACAAATTAAAAGTAGACAGACCAGCTTGTGATGATGTAGTTATTGCCGTTTCCACTCTTCAAAGTCATTATTCTCTTGTAAGTCATAGACCATTTTGGTGTGTTAAGGCTCTTGTTGAAATATTCTCAGAGTTTGCATGCAAAGAAGATGTTGTCAGTATGTTAGGATTTGTTAACTGTGAATTGTCAAGGAAATGCATTTCGAAGAAAAACTATAAGCATATCTATCGAATAGAGAGCACACTTACCAAGAAATGGTACCTCTTTCCTGGATATTATGAACCTCGTGAGGATGTGCTTCATGaaacaaatatgtaaaaatgcTAAATTACTTAGATTTCtttcagagaaaaaaaataacaaaatagcGGGAACCTCAGTACAGGAATCGCAACTCTATTTAGCGTCGGTAGTTCCCTCAGCATGACTCGGCAGAACGGGTTAGCCCacttaaccgggctggctcgcctcatataaacaggccctagtCTTCTTTGCATCCATTTCGTGTCTGTGGAGATTTTTTACACACACACCTGAAacgatgcgagggagactattATCTCTATCATCTTGTGTGCTCCAGTTCTATACGTGACTGACTAGTGGATTATGGGTAAGCTAAttgaatagtccagtttcatgttcttcgtTGCTCAGGCTAAAACCAATATAgagatacttgagctgacgtacTACTACTATTCTGTTTCGTATCTTGAGATACATAAGGCCTCCGTAAAGCATTTCCACCTCTCTCGGTTCGCTGCAACAGTCCTTGCTTCCTCCCAGAATTTCCATCCACCTTCCATTCTTTCCCTCTCAACAGTCCTACGCCATGTTGTTTTTGGTCTTCCTCTACGTCTTCTACCCTCCGGGGCCCATGTCAAGGCAATCCCTTCATCACAGTTCTTGTCTTTTCTGAGAATGTGCCCTATCATTTTCCATCTACATCTCATTACCTCTTGACTTAATGGCTCCATCTCAGCCCTTTTCAGTAACTCTTCCGTGCTAACATGATCCTTGCATTGCACCTTAAGTATTTCccttaaacatttattttggaaCACATCAATTTCTTTATCACCACCCTTGTTCATTTTCCATGTCTCACAACCATAGAGCAAAACCGGTACTGCCAAGGTCTTATAAAGCTtgatttttgttcttcttgtgaTACTTTTTGAGCTCCAAATTTTCTTCAACTTAATAAATGCACCCCTTGCCTTAGAAATTCTGTTTCTTAAATCTCTCATTCCTCCGCCTTCCTTGCACAACTTGGCTCCAAGATATGTAAACTCTTCAGTTTCTTCAACG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V8I7	Volume-regulated anion channel subunit LRRC8A OS=Rattus norvegicus OX=10116 GN=Lrrc8a PE=1 SV=1
Q80WG5	Volume-regulated anion channel subunit LRRC8A OS=Mus musculus OX=10090 GN=Lrrc8a PE=1 SV=1
Q8IWT6	Volume-regulated anion channel subunit LRRC8A OS=Homo sapiens OX=9606 GN=LRRC8A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12534 all species →	Pannexin_like	Pannexin-like TM region of LRRC8	Family	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021040 all species →	Domain	LRRC8, pannexin-like TM region	Interproscan
IPR002138 all species →	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47901 all species →	CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14951	ATP13A3_4_5; cation-transporting P-type ATPase 13A3/4/5	EC:7.2.2.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.