Gene detail

Detailed information of ENSDLIP00000004923.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_015780003.1, PREDICTED: volume-regulated anion channel subunit LRRC8A-like [Acropora digitifera]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

ENSDLIT00000005366

ATGTTTTCAATAGACCAACTTGATAAATTCAAAGGAAGTAATCCATCGCTACAGATGCTTAAACCATGGTGGGATGTGTTCACCGATTACCTTAGTATTGGAATGGTGCTTGTCTCAGTATTAGCAGGGGCAATGCAAGCATCTAAAGGCAACCTTTACTGTCTCCCTACTTTTGATTGCAACTCTGCAATGTTAAATCAAAGCATGTCAGCATTTGGAATTGCTATCGACTGTAAAGTTTCTTCGTTAAAGGCAAATCATTCAAGCCTACCCACCACAACAGTCTTGTTAAAACTACAAAGTCAAGGCCAGTACGATTTTGTCAATTCAGAGTGCAGTTACACTGCAGTTCATTGGTTTGCATCatacttttcatttattattttccttgAATCTGTACTACTCACTGTAGCTAATCACCTCTGTCTTAAACTGCCAATGTCACTATCAATAATGGAACATTTTGTTTCTATGGTTACTGAGGGCAATAGCATTTCTGGAAAAAATTTACATGTGTGTAATACACTTTGGGATACAGACCACGCTAATTACTACAACATTGACATGTCAGAGCAGCAAAACCGAAATCGATCGGCAGCAGCATCGCTTGACACGGTAGAACCAAACAAAGCTAGAAGTTTACAGGAAAAAGTGCAAAAGTTCCAAGATACtcagaagaaaagagaagagaaagcCGGTTTTGTGAGAAAGTTCAGatggatttattttattcagtcATTTCTAAAGTGtgtattatttgttgttttagttgttATCAATTCTATCTATTTCAGCAACTTAGAAATGACTGTGAAATGCAAAGTTGACTATTTCATGGCCGAAAAAACTGCAAACTTCAAGTGTTTGAATGTTCTGATTCCCTTTTTTATCGGGGTGTTTTGGATATTACTACTTCTCGTTATTGCTCATGGTATACTGGCTGTCGGTACTTTGATTTGGACAtgcagaaaaatatattacaataaatatgaCTTTAGTATGAATCAGGAAGATAACGAGGCAGTGCAACATGGTGAAATAGACCCTGTGACGGGGGATACATCTTTCCTATTTCACCTTTTGGATAAGTATAACAAGTTGTACTCAAACAGATTTGccatattttttacaaaaacgaacgaagaaaagcttagAACATACATTCTTGCTAAGGATTGGCCCGTAGAAAGATTGGAAAGGTTTTCTACTGACTGTGGACACACGTTGAAGCTTCCCGGAAAATTATGTGGTATCCCAAAGACCGTATTTGAAATGACAAACTTGCATGTAATTGAATTACGTGCATTCAAGAAATTACCAGATTCTGACTTTGATCATGAAGGCTGGAAAGAACTTTGCAATTTACGAACTTTGAAAATCATAAGCTGTCATCTTTATAAAATACCTGTaggaattttcaaaattaaaactttagAGCGTTTGGATTTGTCTGACAACCAAATAGAGTGCATCCCTGAAGACATACAGAAACTTAAAGAGTTAAAGATGTTGAACATGTGTAAAAACAATGTTTCAGAAGGTGTGCAACACTTGATTGCTATGAAGGACTTAACAATAGCCCTTACTGGAAATCCTTATCTGGAGTTGGATCGGTTCTGTAGTGACAGAAAGCAAATGAAGTGCAACAAAGTATACATCgatgaacaaaatattactCCTCAAGCAAAATGTTCTCTTGGCGATAGTATTTGCTTTGATAACGCCTGTTTATATATTGATCCTATTGATGTAGTGAAGTACTCACGAGACCAATATCCAGAGGTTGAACAAGAAAGAAGAACAGCTGAGAATGTCTATCATATGACATCCTACCCGAAAGGACTAGCTTTGGTAATCAAGCTTGAATATACATCTACTCCGCCTGTTGACCGTAAAAATGAAGCCCCATTGGAAAAGCATTTACAACAAATTGGATATAAGTGCTACGACAAATACATGGAGCGAGACAAACGGCTGCGTTCTATAAATACCGagaatgtttttaaacaaCTTCTATCACGTTTGTTAAAGGATCATCAGCCACTTGATTCCCTTGTGATAGTTTGGTTGGGATGTTGTACCCAAGAAGGATTGATTCTTGAAGATAAACAAACCATTATTACTGTTAAGAGAATAACTGAAATACTAAATGGATTTGCTAACTTGGCAGGCAAACCAAAGCTTCTCTATATCCAGGCATGTTTGCATGAATCTCATGACCATATAGTCCATATCAAGGCGACATCGCAGCATTCtttgacagacagacaactGCTCTTTCCAGACTCcacaacaaagaaagaaataatgcCGACTGAAATGAACGTTATTCTAGATCAGGAAAGTCTCCCATACTACAAATTAAAAGTAGACAGACCAGCTTGTGATGATGTAGTTATTGCCGTTTCCACTCTTCAAAGTCATTATTCTCTTtgctatttactactaaatggtgacaactgttgcacaccttga

Transcript

ENSDLIT00000005366

TTAATTGATCTTCATCATTTTTCTTGGTTGAGTTTATTCAGTATATTCATTGCTGTGTGTTGGGAGACATACAACAAGGTTTTGTCGACGGAACAGTTTAATCCATGGCTAAACTATGTGAGTTTCTTTCTTGACAATCCACCAATATTTCAACGGTGTCTCTTCTGAAATGCTGAGTTTATAAAGATTGTTTATAGTGCATTTTCAAGATGTTTTCAATAGACCAACTTGATAAATTCAAAGGAAGTAATCCATCGCTACAGATGCTTAAACCATGGTGGGATGTGTTCACCGATTACCTTAGTATTGGAATGGTGCTTGTCTCAGTATTAGCAGGGGCAATGCAAGCATCTAAAGGCAACCTTTACTGTCTCCCTACTTTTGATTGCAACTCTGCAATGTTAAATCAAAGCATGTCAGCATTTGGAATTGCTATCGACTGTAAAGTTTCTTCGTTAAAGGCAAATCATTCAAGCCTACCCACCACAACAGTCTTGTTAAAACTACAAAGTCAAGGCCAGTACGATTTTGTCAATTCAGAGTGCAGTTACACTGCAGTTCATTGGTTTGCATCatacttttcatttattattttccttgAATCTGTACTACTCACTGTAGCTAATCACCTCTGTCTTAAACTGCCAATGTCACTATCAATAATGGAACATTTTGTTTCTATGGTTACTGAGGGCAATAGCATTTCTGGAAAAAATTTACATGTGTGTAATACACTTTGGGATACAGACCACGCTAATTACTACAACATTGACATGTCAGAGCAGCAAAACCGAAATCGATCGGCAGCAGCATCGCTTGACACGGTAGAACCAAACAAAGCTAGAAGTTTACAGGAAAAAGTGCAAAAGTTCCAAGATACtcagaagaaaagagaagagaaagcCGGTTTTGTGAGAAAGTTCAGatggatttattttattcagtcATTTCTAAAGTGtgtattatttgttgttttagttgttATCAATTCTATCTATTTCAGCAACTTAGAAATGACTGTGAAATGCAAAGTTGACTATTTCATGGCCGAAAAAACTGCAAACTTCAAGTGTTTGAATGTTCTGATTCCCTTTTTTATCGGGGTGTTTTGGATATTACTACTTCTCGTTATTGCTCATGGTATACTGGCTGTCGGTACTTTGATTTGGACAtgcagaaaaatatattacaataaatatgaCTTTAGTATGAATCAGGAAGATAACGAGGCAGTGCAACATGGTGAAATAGACCCTGTGACGGGGGATACATCTTTCCTATTTCACCTTTTGGATAAGTATAACAAGTTGTACTCAAACAGATTTGccatattttttacaaaaacgaacgaagaaaagcttagAACATACATTCTTGCTAAGGATTGGCCCGTAGAAAGATTGGAAAGGTTTTCTACTGACTGTGGACACACGTTGAAGCTTCCCGGAAAATTATGTGGTATCCCAAAGACCGTATTTGAAATGACAAACTTGCATGTAATTGAATTACGTGCATTCAAGAAATTACCAGATTCTGACTTTGATCATGAAGGCTGGAAAGAACTTTGCAATTTACGAACTTTGAAAATCATAAGCTGTCATCTTTATAAAATACCTGTaggaattttcaaaattaaaactttagAGCGTTTGGATTTGTCTGACAACCAAATAGAGTGCATCCCTGAAGACATACAGAAACTTAAAGAGTTAAAGATGTTGAACATGTGTAAAAACAATGTTTCAGAAGGTGTGCAACACTTGATTGCTATGAAGGACTTAACAATAGCCCTTACTGGAAATCCTTATCTGGAGTTGGATCGGTTCTGTAGTGACAGAAAGCAAATGAAGTGCAACAAAGTATACATCgatgaacaaaatattactCCTCAAGCAAAATGTTCTCTTGGCGATAGTATTTGCTTTGATAACGCCTGTTTATATATTGATCCTATTGATGTAGTGAAGTACTCACGAGACCAATATCCAGAGGTTGAACAAGAAAGAAGAACAGCTGAGAATGTCTATCATATGACATCCTACCCGAAAGGACTAGCTTTGGTAATCAAGCTTGAATATACATCTACTCCGCCTGTTGACCGTAAAAATGAAGCCCCATTGGAAAAGCATTTACAACAAATTGGATATAAGTGCTACGACAAATACATGGAGCGAGACAAACGGCTGCGTTCTATAAATACCGagaatgtttttaaacaaCTTCTATCACGTTTGTTAAAGGATCATCAGCCACTTGATTCCCTTGTGATAGTTTGGTTGGGATGTTGTACCCAAGAAGGATTGATTCTTGAAGATAAACAAACCATTATTACTGTTAAGAGAATAACTGAAATACTAAATGGATTTGCTAACTTGGCAGGCAAACCAAAGCTTCTCTATATCCAGGCATGTTTGCATGAATCTCATGACCATATAGTCCATATCAAGGCGACATCGCAGCATTCtttgacagacagacaactGCTCTTTCCAGACTCcacaacaaagaaagaaataatgcCGACTGAAATGAACGTTATTCTAGATCAGGAAAGTCTCCCATACTACAAATTAAAAGTAGACAGACCAGCTTGTGATGATGTAGTTATTGCCGTTTCCACTCTTCAAAGTCATTATTCTCTTtgctatttactactaaatggtgacaactgttgcacaccttgagtgtttgtactctatgaTGATGAACTATCAATTGCATTGTCCATTGGCTAGTTCTTACTGGTTAAAGTTACCTTTATCCTCTCCTTCCCGCATGATTCTGATATTCAGCCTAACCATCTCATAGTggtggggaggggggtggggataggggggaggggtggaaTATAAAACCAGGAAAAAATATCTTCTATTTTGGATGATATTTGTAAAACTACACAGTCTAACAACAGACTTTCCACTTGCCTTGATGGTGCATCTAGTCTCCAGATATCAGCTGTGTCCAATCTATTCCTGGTAATAACAGCACCTTGGCCAGGTTTTACGCCACCCAGTATAAAGTATATATCTGCAATGATGTGCTCCTGGGATAGCTTGGTTATtgcagcatcaaaatccatgtTATCTGTAGCAACGACACTTCTGACAAAAAAGGTGATAGGATGAGCTTGTTTGTCTAGTACTGCCATGATGATGTTTTCAATAAGTGAACCTTTGTCACGTTCATCAATTGAGATTGTTACAGCATTGGGTCGTTGTGCAGTTGGCAGGCCTACTTGACCAGCAAATACAACTCCACTATACACAGTCTTGCCTATCAATGCATAGAAATGTCATGAATGTGATGTACAAAATGCAGTGTCTAGctattggttgattgattgatggtttgatagatggatgaattggTTGACTGCCTGATTTAAATTGATGAAAGGATTTGACTAATTCATGTTTCATtgttgattgatcgattgaatttgattgattgattacaaaaatatggaaaaaaagtccctaaaaaattaaagatgtCAATTCTATGAAACTCTGCAAAAAATTTACTAAAAGATtttctttaaagaaaaatacatttatatctggtcaaaaaaaacttttaggTAATTTTTCAGTGGGTGGTAGTAGACTCAAAAGGATCTTGCTATTTTAACAACCACACACTACAAAAAGAGCTACTAtactaatttttttcttaactat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V8I7	Volume-regulated anion channel subunit LRRC8A OS=Rattus norvegicus OX=10116 GN=Lrrc8a PE=1 SV=1
Q80WG5	Volume-regulated anion channel subunit LRRC8A OS=Mus musculus OX=10090 GN=Lrrc8a PE=1 SV=1
Q8IWT6	Volume-regulated anion channel subunit LRRC8A OS=Homo sapiens OX=9606 GN=LRRC8A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12534 all species →	Pannexin_like	Pannexin-like TM region of LRRC8	Family	Interproscan
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR021040 all species →	Domain	LRRC8, pannexin-like TM region	Interproscan
IPR050715 all species →	Family	Leucine-rich repeat and signaling effector domain-containing protein	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45752 all species →	LEUCINE-RICH REPEAT-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000004923.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.