Gene detail

Detailed information of ENSDLIP00000005622.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020907552.1, RING finger protein 44 isoform X1 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000006070

GAGGAGACcttgtgacgtcacaatgCAATTAGCGTGATGTCAGATGTCAACAAAGGGCCATGGAAGGGTCTCTCCATTGATAAGTCTACAAAGCGCAGCCGCGCGTTCGTCCACATGCACGATTGAAATTAACTGCTAGTATTTTTCCACAATCAATATATACTTCTTCTTGGCGTAATAGTAGGACTGACTCAATTTTGCTGTGAAATTTAGAAGAAAGTGGACGAGGGACAGTAGTTTTGGTTGGTAAAACGAGAGAGTAGGGACACACATTGCTAAGGCTAAAGATTAATACAAAATGGCAAGAACAGCACAAATGCCAACATCTTTAGAACACCCTATGCTTTCTTGTAGTGCCTTGTCTAAGaatgattcaaaatataattatgcTGCACACGTTATAGACAATACTGCAGACTTGCTCTCGCCTGGAATGGCCCATCAACCATTAAGACACATGCCGCCACCAACACCCAATCATCAACATCCACACTCATCAGCATTTCATCGTGTCGCTGGTCAACCTTACGATAGTCATGGCCCTGTTCGAGGATGTCCATACATGCAGGCGCAATCGTCACGGGAACCTCATCATCACTCCCATTACAGATCAATACACCGTGTCTCCAATCCATCGTATTGTCCATCGATGTCAACAACAGTACCACTTCAACATCCCAATGTAACAGCAACACCGGTTATTATAGATCCTGAGCCTCTGCCTACTCATGTACGCAGTGTACCGATTACTAGTCTACCTAATAGATTATTAGTGAATAATGTTCCTATGGCAACACCAACTTTTATTCAACCACCACCAAATGAGaaTCCTGATTTAGATCCCAATTCaaatcatcagcattaccaccaccactaccatcaccaccaccaccaccatcatcactttGTACAGCCACCTTACCAAGTACCACAACAGTCACAACCTCAGCCATACCATCCGCACCGCTACCCTTCTTATCAAATGcatcatcaacattatagAAGATGGCCGCCTAATAATGGCCATCAAGAATGGCCCCAGCATGCAGGCCATATACAACCCCCGCCATTGCTCCATTCAGCTAGTGTGCAAACCTATCCAGATCTACTGTATCATCTACTGTCAGTCATGTCCATGCAACCGGTCCATGGGAACATAGTGCCACAGCCTGTATATGAGGAGACTTACCAACAAGAAAATTATGAGACTTTGTTAAACCTGGCTGAACAAATAGGAGAAGCCAAACCAAAAGGCTTAACACGTGCTGAAATTGACCAGTTGCCGACATTCAGAGTGACAGCGGCATCAAAGAAAAGTAGTGATGATGGAAGATGTGTTGTGTGTTTGGctgattttgatgaaaaacaactCATAAGGACGTTACCATGTTCTCATGACTATCATTCAAGATGTATTGATAAGTGGCTTAAGTCGAATCGGACATGTCCTATATGCCGCACAGAAGTCAAAGTTGGAAACAAGTAAACAACATACAATTGACAGGGAAAAGATGGCATTTTGTCGCATTAATGGTCAAAGTAAACCAGCAAACAGTATTGTTGCATGTTAATACATTATTGAGAATGCAATTGCAACTTGGTGATGGCACATTCAAAACTGAAGAATTCTGAATCTTGTGATTCTAAAGGAATGATTGACGAACAgtgaatgaaaatcaatatATTTCAATTAGGAAGAAACAATTTGATATGCATATTACGATATGTGTGTCTAGTTCAATGGGATGACTACAAATTGTGATAACCAAATGAATTCAagaacattttatatttttaaacctcAGCATTATGTGTCAAGGTTTAAAACTGCTTTCAGAGATGGTTTTATTATGGCAAAGCTGAAAAACAAGCTGAAACTTTATACTTGCAATCAAAGTTTTTGCTTAATTTTGCTCTTAATTAGTATCTTATGGAGAAAATACAGGAAACATTTGCCTTGCGTAAGGAATCAAAAAGCTTTCAAAAAGTGGAGCAATTCGTGAAATTGACTTCAAAACCACCCATATGCTAGTATTAAAGTACCAGTTTAcccaaatttaaaaatttccAATCAGGAAAAATGGATTTTCAACAATCAATGTAAgcataaaatgtatataatgtgTAAAGTTATGTCTACCGGCAGCATACGTCATAAGGTTTTTTATGTCCATGTATTAAACAAATTGCAAGTTATATTAGTACAAAATGATATGGTATATAATCTCGATATATTAGAAAAACTTGAACCAGTGATTAGTAATAAACATTGTAAGAAGAAATTACTTGTAGTATGTTTCAATGGGAATGGAAGTCATAGCTGCAAAGCAATGCCAGCAAAGTGATTTGGGAGTTAGAGTCTGTTGAGTGATTTGACAGCTGATACATATTTGTAAGCAACCCTGCCCACCCAACCCTATTAAAAAATCCTGCAAGTATCACATAGTTCGATTCAATGCAAATAATAACATGAATGTTTGAGTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V7B8	RING finger protein 44 OS=Rattus norvegicus OX=10116 GN=Rnf44 PE=2 SV=1
Q8BI21	E3 ubiquitin-protein ligase RNF38 OS=Mus musculus OX=10090 GN=Rnf38 PE=2 SV=2
Q3UHJ8	RING finger protein 44 OS=Mus musculus OX=10090 GN=Rnf44 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005933 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46171 all species →	GH10160P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19041	RNF38_44; E3 ubiquitin-protein ligase RNF38/44	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.