Gene detail

Detailed information of ENSDLIP00000006162.1 in Diadumene lineata

Genomic Location: chr1:38818810...38832761
NR annotation: XP_020902436.1, sec14 cytosolic factor [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSDLIT00000006616

GGAACTGACTACATCGGCACATGTATAGATCGAGCATCTAGCACACTATACAGTCAATTGCTTTTGACACACAGATCGAATCTGTTTTGTGGTATATGTATCCTtatatattgataatttttgtaaattatgaGTGGATATCACGGAGAACTATCCAAGGCACAGCAATTGGCCCTCGGAGAATTGAAAAGCACATTAACAAAAGATACGTTGGCAGACGAGAAAACCCTGCTAAGGTTCTTAAGGGCAAGAAATTTTGATGTTGATGGCGCTTACAGACAATATATAGCAACTTTGAAGTGGAGAAAAGACAATTGCATCGACCATATATTGGAAAGACCTaGACCGTtggataaagaaatgaaatctATCATGTCCAGTGGTTTCCATGGATTCGATAAATTAGGAAGGCCtgcatattttgaatttactGGAAGAACAGATGTTCAAGCATTAATGAAAGGTATAGATATCGAAACAATGGTACACGTGCATGACATGACAGGAGCTACAATGGTACTAAGGAAAGCCCTAAGTTTATTTAAGAAACTGGCCAAACTGGACCAGGAGTATTATCCGGAGAGAATGGGGAAAaTATTTATTGTCAATGCAACCTGGATATTTCCAGTTTTATGGAAGTGCGCACGTGTATTTCTTGATTCCAAGACGAAAGCTAAATGTGTTGTTCTCAAAAATGGAGAAATCTACAAACTATTGGAATACTTTGACGCCGAGTCTTTACCAAGAGAGTTTGGAGGAACGTGTCAGTGTGCGGATGGGTGCTTGCCGCCAATCCCCAAACATATGagaAACTTATCAGAGGCTCCATTACTCACAGAGCAATGTTCAATAGgtcCAAAGGAGTCATTTGAGAAAGAAGTGGAGTGTACCAATGATTGTGATTCTGTGGCATGGTGTTTTACTTGTAGCAAGGACGTCAAATTTGGTGTCAAATTTAAACCGAGACCTCATTCAGGATGGCATGACAGAGGAAATCAGATCCCAGCAATTTGGGTGATGGATTTAGaaacaaaaagtgaaaatgatTACCCAGTTACAGGGTTTTACACACCGCCCTGTCCTGGTATTTGTTATCTGGTTTGGGATAACCTGGACAGCAAGTGGTCATCAAAAACTATCAAGTATAATGCATTAGTTGGCGAGGCTGGAAGTGACAGCGAAGATGAAAATAACTCAAATGGCCTCAAAAGATCATCAGCTGGAACATACGTATAACAAATTGAATCATATCAAAGAGCTTGATATATCGCAACAATATGCAAAGAAATGGCGGCAGTGGACATGCAATATAGCTTTACAATATGGGCGTGCAATGAAATGCATTATTTAAAATACGGGaatatcaataatttgaaCTCAACCAGAAATAACCACTAAATCACACTGATTACAATCTTATAGATTTATAAATTACTTGTAATTCTGGTATCTAACGGAGGTTTTCAGAaatactgtttgtttatttgggCACTTTGACGGTCTTTAGTTATTGCGACTCCACTAAAAAAGTCTTTCGTACATGCTCGCCTACCCTGACCGGTAGAGAGAAATCGGACAATTACAGCTTATTTAAATATTCGCTCTAAATTGAATTATATACttaaattgatttgaacaaaTTGTTTAGAATACAATAGATTAAGTTTAATCTAAGTTGGTTTCATATTATGTCAGTAGATCTGACATGCAGCAACACAAAGCCACTTTACAAATGCAAGTTATTTGATTTACGGGtatattttgtcattaaataaattgaatagaACATAATTGAGTTGTTTAACAACCTctttatttgaagaaaattaaatttacatttaaagATTAATAACATTGAAATTTATCAGATTTTCTTAAATTTCGAAATTCattatcaaaatagttttgGAAGGAACAATAAATCAtctaattttattaaaattaatgtatagTAGTTaataaaactgtaaaataaaacttatttcctttttatttaagGGTGGGAAATACAAGTATACCCATTTTCTcgaaaaagaatgaaaagtCATCGATGTATGGGATGCGATACTGTATATTGGTGTCGTACGAGCTTGCAGTTTTTTAATTACTAAATTGTGTCCAACCGCTGTTGcgaattgccc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F4JYJ3	Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 OS=Arabidopsis thaliana OX=3702 GN=SFH11 PE=3 SV=1
F4JLE5	Phosphatidylinositol/phosphatidylcholine transfer protein SFH1 OS=Arabidopsis thaliana OX=3702 GN=SFH1 PE=2 SV=1
F4JVA9	Phosphatidylinositol/phosphatidylcholine transfer protein SFH2 OS=Arabidopsis thaliana OX=3702 GN=SFH2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008587 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03765 all species →	CRAL_TRIO_N	CRAL/TRIO, N-terminal domain	Domain	Interproscan
PF00650 all species →	CRAL_TRIO	CRAL/TRIO domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR011074 all species →	Domain	CRAL/TRIO, N-terminal domain	Interproscan
IPR036273 all species →	Homologous_superfamily	CRAL/TRIO, N-terminal domain superfamily	Interproscan
IPR051026 all species →	Family	Phosphatidylinositol/phosphatidylcholine transfer	Interproscan
IPR036598 all species →	Homologous_superfamily	GOLD domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45657 all species →	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for ENSDLIP00000006162.1 in Diadumene lineata.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26544	SEC14, SEC14L; phosphatidylinositol/phosphatidylcholine transfer protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Diadumene lineata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Diadumene lineata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →