Gene detail

Detailed information of ENSDLIP00000006857.1 in Diadumene lineata

Genomic Location: chr11:965944...973199
NR annotation: XP_020916051.1, TIMELESS-interacting protein isoform X1 [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSDLIT00000007408

CGTCGCAAATAGTTTGATCAGAAACAATAGAATCGATAGCTAATCACGAACCACTTCAGACTGGTGAAACTTATGAACACGAATTCTGCAAATGGCTTCTAAAATCAAACgaaacccatagTACGACGAGATGGGATAGCGATGTCCAGCGGTTGTCTAACAAAATGGCGGGAAAAGaccaaaagaaacaaacatggCGGATGGAATAGGGACCATGACTTTCGACAACGATATGGCCGATGATGGCTTTAATGATGGACAAATAGATAATATAtttggtgacgatgatgatattttCAATGCTCCGGCTCCTTTGCCACCATTATCGCCAACAAATCTCACTGGTGAAGCAAATGAAGGAGAACGAGCTGACGAACAAGCTGACGatcaaaagaagacaaaaaaagtCGTAAAACGCTCGCCACAGCCGAGATTAGACGATAGAAGATTATGTTCTGATAGAGGTATACCTGCTTTGAAAAATCTATGTGATGGAATAAAGTTCAAAGGCAAAGGTCATGAGGCTTCAGATCTTAATGTTCTACTACAACGATTTGAACACTGGGCTCACAGACTCTTCCCAAAGTTTACCTTTGAAGATTGCGTTGATCAGATTGAAGCAATATCAGGGAAAAAACTTGTACAGaatACTATCAAGTCTGTTAGAAGAGGAGACACTGGAGATGTTGTTGACTCTGATGAAGAACTTCTAATGAATGGTGATAATGAAGGCAATCAAGCTGAATCATCCTCAATGGACAATGCAGCAACCTTTGGTGGAGAAATCAATGTAGAAGCATCATCTGCTCCTGTGCCCCAACCTGATCTCACTGAAGAGCAGAAAGAACGAATCAGACAGAACAGGTTAAAAGCTCTAGCAAAACGAAAAGAACGACAGCAATTGGAAGAAACTAAACTAAATGatacaacaacagaaaacaaagATACGACACCATCTAAATCGCCATCCAAAGCAAACAAAAGTTTTGATGACGAAAACTCAAGCATCATTGGCAACCAAAGCCCTGAACGAGCCAAATTATCATTTGACAATGAAATAGAAGAAACAGAAAATGAAACTATGGAAACAGAAGAGGCTCTAAACGAAACCATGGGAACAGAAACAGGTGAAAACAAAGCCATGGCAACTGGAGAAACTCAAGAGGAAACTATGGTAACAGAAACAGGTGAAAACAAAGCCATGGCAACTGGAGAAACTCAAGAGGAAACTATGGTAACAGAAACAGGTGAAAACAAAGCCATGGCAACTGGAGAAACTCAGAAGGAACCAATAGCAACTGAcgaaatacaaaagaaacccATGAAGACCAACGTTACGCAAAATGAAGCCAGTGAAACAGAAGTGACGCAAAATGGAACCATTGCAACGGGTGACGAAGAGGAAGAGGTACTTGCGGATATAAATGCAAATACTGTGAACAATGAAACCATGGAAACAGAAATAACGCCCAAGAAAACCACGGGAACAAAAACTAAGAATGCTGTCAACCAAGATGTCTTAACAACggaggtttttgaaaatggtatTGATGAAGGCGATGATCATGTCAGAACTGAAAATGGAGATGTTACTATGGAAACTGTAAGCGCGGGAAAACATACGGAAAATAAAGACTTGATGACGGCAAATCTTGAACACATTGCCATGGAAACATGATTGTAATAATTCGTTTGTTGTCAAATGTGAGTTGTATATCAATGGGGATATCGAATAATAAATAGAAGATCTTTTCGTTAAGTTAAAGATCAAGAAAACGTGAATGTTAAAACGTTATCAGTTGAATATGGTCTTTTATGCGAATCAAGTTTCATCGAAAGCTATTGACATAGTTCTCTTTTCCGTTTGTGTTAAATAGTTGGAGGGAGCGAGAACTTTCTCATAGTAGAAAAGGTCACAAATGTCTGAATACATAACTATCAACAGTGTAAGCGCCCTGGAAATCCTTCTTTCAGGGCAGTGTTATTTGCGTCTCAAGTTTTACTAGGTCAATACACAGCATAACTCTGGAACTTTGGGTTTCGTAGAACAACCACAAAGAAAGGCCTGGCCTTCGTAGTTCTCATAAACAGGTCATTGGCAACGCAAGTTCTGTAATATAACATTGACGAgtagttttgttgttgttttctcgcagACACCATTGTTATGAGTACGACTGCATAAGGTGCTCATGAGGTTATGTGGTCCAGGCTTGGCTAGCTGGGAAGGCACACACGCAATGCTTTGTGGGTCAATCTTCCAGATCACTCATTATCTACTGAAGTGGATAACGACGTTAAACGTTGAATTAGACCGAATCAACAGGACGTATATTGCAGTTTTACTAGTCTTTTATGTTATGAATTAAAACTGATATTAAACCAAAATTAAGACAATAAGATTATTCTATGTGCGCTACAGGGATCCGATTCGTCTGACCTACTACCCACTGAGTTGAATTGGTCAATTGATACCAGTCGGTCAAgcgaaatattttaaaaacatttaatttgtatttgctGCATGTTTATGCAAGTAACAAAGAACGTTTTATAACATTGGGTTAGCCCAGTTGAGAAGAAGACTGAAATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BVW5	TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2
Q6DBR4	TIMELESS-interacting protein OS=Danio rerio OX=7955 GN=tipin PE=2 SV=1
Q8INX3	Protein TIPIN homolog OS=Drosophila melanogaster OX=7227 GN=CG10336 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006951 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07962 all species →	Swi3	Replication Fork Protection Component Swi3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040038 all species →	Family	TIPIN/Csm3/Swi3	Interproscan
IPR012923 all species →	Domain	Chromosome segregation in meiosis protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13220 all species →	TIMELESS INTERACTING-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000076 all species →	Biological Process	DNA replication checkpoint signaling	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0031298 all species →	Cellular Component	replication fork protection complex	Interproscan
GO:0043111 all species →	Biological Process	replication fork arrest	Interproscan
GO:0048478 all species →	Biological Process	obsolete replication fork protection	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10998	TIPIN, CSM3, SWI3; replication fork protection complex subunit TIPIN/Csm3/Swi3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.