Gene detail

Detailed information of ENSDLIP00000006967.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020892450.1, epsilon-sarcoglycan [Exaiptasia diaphana]
Species abbreviation DLINE · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000007526

AACAAATCTTCaaagtttgacaaattttCTGGATATTTCTCCTCAAGTTCTTTCCCAAAATCCGCAGCAAACCATCCATATTTATACTTGGTCGATGTGAGATATAGTTCGTGTTAGTTTTGCACCAAATAAGGCTGGCGTTGTCTTTCACGGTTGGTCGCTTGGACGTTTCTAAAATCAATGCATATTGATATTGCTGCATCAAACTAACAACCTCGGTTCTCATCACAAAGCTCTAATGCTATAGATAATTCATGGTGTGGCTTTAAGACTCCAAAATGTCgcttaaaaatattttagCCATTTGTATATATCTGGTATATGCTAGAAGGTGTTCAGCAGACCTGCCCACTCAGCCTGCTTCTGTTGGTGTTTTCTTTCAGTATCTTATACCAAAAGTCAACTTTGCTTCAGATGTATCCTTCCCAAAGAATATCAAGTTCACTGTGTCTAAACTTGGTGGACCAGACCTGCCAAAGTGGCTCCGTATTGAGCAAGATGATCCTGGTAGTGAAGCCTTTATCTATGGTACTCCTCCCAAAGACAGCAAGGAAAATCTTACATTGGAGaTAACAGGATGGGATAAAAGAGATTACAGCACAAAGAGAAACAATGTTGTCATCGATGTGGATGGCTCTAAAGaGCCACCACGATATATTGCAGAGtttaaaatcaacaattctaATATAGACAATTTCTTGGTGAAACTGCAACCCAGTATTTTTAAACGAAAGCTAGAAGAGATCTGGAGATCGCCAAAGATAGACCTTAAAGTAGTTAAAGTAGAGTCAATGTTAGACAGGGGAGGGAGGATACCAATACCTCCTAAAGATGAAGGtgtttttatTGCTGTTGGCGGTGATGAAGAATACACGTTATTGCAAGCTGATTATCTAGGCTGCCAAGGTCTAAAGCCTGCTGTGAAACAGGTCTTTGATCCCTCTGATTTCTGGGAAATTGACTGGTGTAAAGTTAAACTTTACGATACCAAAGACCCAGCCTATATCGGCAATAACACATCCAGCCAAGAACCATTCAATGATCCCATAATACAATCATCTTACTCTCCACCTGAAATGAAACCTGTCGCACGAGATTATGCTGGCTTGTATGTTGCAGTGTTGATCCTGCCTATCATCCTGATACTGATAGTGGTCATTATACTGGCTATAATAATGTGTTGCTTCCGACAGGGCAAaGACAAACGAGATGCAGCCACTCCACGacCTCAACTCCAGTATCACGACTCTATCCTACGTACAACGTTCCAGTTAAGGAAAATGGATACCAGTGAAAATGCTGATCTAACACGACGTAACAATAGTCAGAATGCACCGCGGTCCGAGTCCCCAGCGCAGGCATCAACCCCTTATGAAcgaaGTGTTACCCCAGATGATGAGGCGTCTCCTCGTGAAGCACCACCCCCTTATCGCATGCCTCCCCCAGCAGCTGTTAGTGCCACTTCACCCGAAGGACGAAGTCAGTATTACCAGTCAAGTACTGCTTAGGCCAACTgagcaggcaggcaggcagacagacagacagccaAGAATAGAAAGCGAAACAGACAACTAGACGGACAGACTGATACAGATTTGGATAGTGTGTATAGATCGACTTCTAAACAAGAGTTTTCCCTGTCTACCTCAAGCACACAATGTATATGTAAACTCCTTTGACCTTTCACTGGATATTGAGGATATAAATTGTGCAAACCGCTCGACGCAATGCGTAACGGAATGCACGTATGGTCGGGAGATGCTTATAGTTCACACACCAACTCTATAATACTCCAAATTGCCAACAACTCTATGCAACGTGTAACGATATGCACGCATGGTCGGAAGATACTTCTAGTTTTCACAAAACCTGTATTATTCTTGTGCATAATTCTAATGTCTACGTTTCTAATCGAGCAGTAATCGCGACTGACTAAAATGTAGAGGTAGAAGTATGAGCATAAATTAAAGGTGGTTGTAGATTTTAGCGTTGCGCTATACATATAGACACAAATTTCAACGAAGTTAAACATATATCAGCAATGTAAGAAAAGTCGTAAtcgacaaaaaaattgcacaagaAAAGATAGGGCGACATATGCACTTAGGAATGTGgttattttgagaaaaactATTTATAGTATAGCTGTACAGTGGTTGTCATAAAACCGTGAAACGACTAGAGTGcctgcactaaaagtgtgcaacataaataccactaaatatacattaatttttagtTATACACGTTCGTATTTTGAACGAGTGTAAGCTCCTAGACGATACGtgtctaaataaaatattgtattgtattgtaaataGCTAGCGTTATTTTATGAtagttctattgttttcttttgtttaattaatgctatttac

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005522 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20989 all species →	Sarcoglycan_2_C	Sarcoglycan alpha/epsilon second domain	Domain	Interproscan
PF05510 all species →	Sarcoglycan_2	Sarcoglycan alpha/epsilon N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008908 all species →	Family	Sarcoglycan alpha/epsilon	Interproscan
IPR048347 all species →	Domain	Sarcoglycan alpha/epsilon second domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR048346 all species →	Domain	Sarcoglycan alpha/epsilon, N-terminal domain	Interproscan
IPR006644 all species →	Domain	Dystroglycan-type cadherin-like	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10132 all species →	ALPHA-/EPSILON-SARCOGLYCAN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016012 all species →	Cellular Component	sarcoglycan complex	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12565	SGCA; alpha-sarcoglycan	-	Viral myocarditis	ko05416	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.