Gene detail

Detailed information of ENSDLIP00000007560.1 in Diadumene lineata

Genomic Location: not available for this species
NR annotation: XP_020894466.1, U1 small nuclear ribonucleoprotein A [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families

Sequence

CDS

Transcript

ENSDLIT00000008238

GTCTTGGAACATGACCGTGAGAACATTGAAGGAGAAGGCCTGGGGACTAAACGTATTCGGCGCGTTGTTTTAAGCATCTTTCTTTTTTGGAGTTTGTGTGTTGATATCTGTTCTCCATCCTTCCTTAATTCATCACATCTTGTCGTCTAAAAGCTAGAGTGAGCTCTTTGATATCTTCTGCATCCATCTTagtctttattttttaagtttatCTAAAGTAAGTCCAGTAATTTGTCAGAGGAAACACCGGCCAATTCACTGACACTTTGTCGACGTCTTGTGTTTGTAGTTTTTACAGCATGGAAATACCACCAAGTCAAACTATTTACATCAATAATCTAAATGAGAAGATTAAAAAAGAAGAACTCAAGAAGTCCCTCTATGCTATATTTTCCCAGTTTGGTCCCATTCTAGACATTGTAGCTTTAAAAACGCTCAAAATGAGAGGCCAGGCATTTGTAGTATTTAGGGACTTGCCGAGTGCATCTAATGCTCTGCGGTCCATGCAAGGATTTCCATTTTACGACAAACCAATGAGAATTCATTATGCCAAAAGTAAGTCAGATGCTGTATCCAAACTAGAAGGGACCTTTGTACAAAGAGAGAAGAAAccaagagaaaaaagaaaggcAGAGCCTGCTGCTCGTCCAGCCAAGAAACCACAACAGCAAGTACCACCACCAATGGCTGGCATGCCACAGGTTATGCCTGGTATGGTTCCTGGACACCCTGGTATGGTGCCAAATGTTGCAGCAGTTGGTCAACCACCAGCAGGAGTAGTCCAACAACAAGCACCAGATGTACCCAACAGTATCTTGTTCTTAACTAACCTACCACCAGAGACAACAGACATGATGTTATCTATGTTATTCAACCAaTTTCCTGGATTCAAAGAAGTACGTCTTGTTCCTGGTCGATCAGATTTTGCTTTCGTAGAATTTGAGAACGAAGTCCAAGCAGGAACAGCCAAAGATGCTCTACAAGGATTTAGAATAACACCGACCAATGCCATGAACATCACATTCGCCAAGAAGTAGTTTTTAGGTTCATCGCATATACAGAGAATTAGTTGTTAGTTTGAAAGTACTGATATGCATTGGATTTTTGCTGCAATTTTTGACAGTTTTGTAGACTATTTGTTTTAtgttggggggaggggtggggtggAGGGTAATAAAAAAACCTGGGCATCGCATCGTTTTTTAAGCTTCTGTTTTGGTATTGTTTTTGgtatttcacttttcaaagatATATTGCATCCTGATTTTGTGgaaagaaattgttttctcCCTTCAAATGTGAACTGCTTCACAATAATTTTCCCCGCAacaaaaatccctaaaattgCAGCAAACATTTCACGTGTGTCAGAGTACGTGTTGatagtaaaaaacaaaatggcatTGCACTCAGCCATGataattgtatatattttataaatattccATTATCTTGGCAGCATTGCACTTGGCTGTCGTAGCAATACTAATTGTACTTTTTATCATGATTATCGAGCCTTTTTTGTTGGGATACTTCAAGTCTTTTCGACGGCTTTGCCTAAGTTGTCATACTTTGCATGCGTCTTGACTCCAAACTGTTTTAGTAAAATATCTAAGCTAATATTGGggaatattttctattttctcgACGGCATTGCACCTTGCCGTCTTGATTGTGACTTGAcccaaaaatgtatttaaattgcGATTCAGTGTTTCTTTACTTCtccgtttttttgtttgtttcttgtcTTTTGAATAACTTTCAGATCGCTGTTATTATGTTTAGAAGTTTGCTATTGTAACTACAGAATTACTGCATTTTACTGTATTTTCACTTCTCCCAATTGTTTTAATGTTAATTTATGATTCCCTTTTGTTTGTGAACTGTGCACACTTGTTATTGAGCTGATAATGACCTGCACTTGGCAGTCACATTCTCCATACATTGCACTTAGTTTGGTTGTATGTAAGACTGATACTACTTGTCAAGCTGGCTTTGAGAAGCGATATACTCAAGCCTTAGTTGGTTATCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P43332	U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster OX=7227 GN=snf PE=1 SV=1
Q06AA4	U1 small nuclear ribonucleoprotein A OS=Sus scrofa OX=9823 GN=SNRPA PE=1 SV=1
Q2KIR1	U1 small nuclear ribonucleoprotein A OS=Bos taurus OX=9913 GN=SNRPA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007796 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10501 all species →	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0030619 all species →	Molecular Function	U1 snRNA binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSDLIP00000007560.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.