Genomic Location: chr12:12696220...12704129
NR annotation: XP_020916795.1, L-gulonolactone oxidase [Exaiptasia diaphana]
Species Diadumene lineata · all data for this species · gene families
| CDS |
| ENSDLIT00000009721 |
| Transcript |
| ENSDLIT00000009721 |
| Protein |
| ENSDLIP00000008758.1 |
| UniProt accession | Description |
|---|---|
| Q90YK3 | L-gulonolactone oxidase OS=Scyliorhinus torazame OX=75743 GN=GULO PE=2 SV=1 |
| Q3ZC33 | L-gulonolactone oxidase OS=Bos taurus OX=9913 GN=GULO PE=2 SV=3 |
| Q8HXW0 | L-gulonolactone oxidase OS=Sus scrofa OX=9823 GN=GULO PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004672 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04030 all species → | ALO | D-arabinono-1,4-lactone oxidase | Family | Interproscan |
| PF01565 all species → | FAD_binding_4 | FAD binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007173 all species → | Domain | D-arabinono-1,4-lactone oxidase, C-terminal domain | Interproscan |
| IPR010031 all species → | Family | L-gulonolactone/D-arabinono-1,4-lactone oxidase-like | Interproscan |
| IPR016166 all species → | Domain | FAD-binding domain, PCMH-type | Interproscan |
| IPR036318 all species → | Homologous_superfamily | FAD-binding, type PCMH-like superfamily | Interproscan |
| IPR030654 all species → | Family | Sugar 1,4-lactone oxidase | Interproscan |
| IPR016169 all species → | Homologous_superfamily | FAD-binding, type PCMH, subdomain 2 | Interproscan |
| IPR016171 all species → | Homologous_superfamily | Vanillyl-alcohol oxidase, C-terminal subdomain 2 | Interproscan |
| IPR016167 all species → | Homologous_superfamily | FAD-binding, type PCMH, subdomain 1 | Interproscan |
| IPR006094 all species → | Domain | FAD linked oxidase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43762 all species → | L-GULONOLACTONE OXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003885 all species → | Molecular Function | D-arabinono-1,4-lactone oxidase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016899 all species → | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor | Interproscan |
| GO:0071949 all species → | Molecular Function | FAD binding | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00103 | GULO; L-gulonolactone oxidase | EC:1.1.3.8 | Ascorbate and aldarate metabolism | ko00053 | deepkoala |
Genes whose expression across the transcriptome samples of Diadumene lineata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Diadumene lineata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
